Mercurial > repos > bitlab > bitlab
view gecko/frags2align.xml @ 2:ac1ecf12863a draft default tip
Uploaded
author | bitlab |
---|---|
date | Thu, 13 Dec 2018 08:57:14 -0500 |
parents | 35af401890c0 |
children |
line wrap: on
line source
<tool id="frags2align" name="Frags to align"> <description>Extract alignments from a binary Frags file</description> <inputs> <param name="fragsFile" type="data" format="frags" label="Frags file" help="Binary Frags file" /> <param name="fastaX" type="data" format="fasta" label="x Genome" help="Single genome file in fasta format"/> <param name="fastaY" type="data" value="fasta" label="y Genome" help="Single genome file in fasta format" /> </inputs> <command>/home/galaxy-bitlab/galaxy/tools/gecko/bin/frags2align.sh $fragsFile $fastaX $fastaY $alignments </command> <outputs> <data name="alignments" format="txt" label="Frags to align for genomes ${fastaX.name}_${fastaY.name}"/> </outputs> </tool>