Mercurial > repos > bitlab > plidflow
changeset 3:d45ae17b4470 draft
Removed modeller which was not necessary anymore
| author | bitlab |
|---|---|
| date | Mon, 27 Jan 2020 02:49:46 -0500 |
| parents | afd5b5ffc38f |
| children | b9e7ec4e3cde |
| files | PLIDflow/modeller_plidflow.xml PLIDflow/scripts/ADT_VENV/requirements.txt |
| diffstat | 2 files changed, 77 insertions(+), 10 deletions(-) [+] |
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--- a/PLIDflow/modeller_plidflow.xml Tue Jan 14 07:52:48 2020 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,10 +0,0 @@ -<tool id="modeller_plidflow" name="PLIDflow: Modeller"> - <description>Modeller description</description> - <inputs> - <param name="pdbFile" type="data" format="txt" label="PDB file" help="Select a valid PDB file"/> - </inputs> - <command>mod9.19 $pdbFile $mutantPdbFile0 </command> - <outputs> - <data name="mutantPdbFile0" format="txt" label="mutant.PDB"/> - </outputs> -</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/PLIDflow/scripts/ADT_VENV/requirements.txt Mon Jan 27 02:49:46 2020 -0500 @@ -0,0 +1,77 @@ +amqp==1.4.8 +anyjson==0.3.3 +asn1crypto==0.24.0 +Babel==2.5.1 +bcrypt==3.1.4 +Beaker==1.7.0 +bioblend==0.7.0 +boltons==17.1.0 +boto==2.38.0 +boto3==1.6.21 +botocore==1.9.21 +bx-python==0.7.3 +bz2file==0.98 +certifi==2017.7.27.1 +cffi==1.11.5 +chardet==3.0.4 +Cheetah==2.4.4 +cryptography==2.2.2 +decorator==4.0.2 +dictobj==0.3.1 +docopt==0.6.2 +docutils==0.14 +ecdsa==0.13 +enum34==1.1.6 +Fabric==1.13.2 +futures==3.2.0 +galaxy-sequence-utils==1.0.2 +h5py==2.7.1 +idna==2.6 +ipaddress==1.0.18 +jmespath==0.9.3 +kombu==3.0.30 +Mako==1.0.2 +Markdown==2.6.3 +MarkupSafe==1.0 +mercurial==3.7.3 +nose==1.3.7 +numpy==1.8.0 +packaging==16.8 +paramiko==2.2.1 +Parsley==1.3 +Paste==2.0.2 +PasteDeploy==1.5.2 +PasteScript==2.0.2 +pbr==3.1.1 +pkg-resources==0.0.0 +psutil==4.1.0 +pulsar-galaxy-lib==0.8.0 +pyasn1==0.4.2 +pycparser==2.18 +pycrypto==2.6.1 +pykwalify==1.6.0 +PyNaCl==1.2.1 +pyparsing==2.1.1 +pysam==0.14 +python-dateutil==2.5.3 +python-genomespaceclient==0.1.8 +python-swiftclient==3.5.0 +pytz==2017.3 +PyYAML==3.12 +repoze.lru==0.6 +requests==2.18.4 +requests-toolbelt==0.8.0 +Routes==2.4.1 +s3transfer==0.1.13 +six==1.11.0 +SQLAlchemy==1.0.15 +sqlalchemy-migrate==0.11.0 +SQLAlchemy-Utils==0.32.19 +sqlparse==0.1.16 +svgwrite==1.1.6 +Tempita==0.5.3.dev0 +urllib3==1.22 +uWSGI==2.0.15 +WebHelpers==1.3 +WebOb==1.4.1 +Whoosh==2.7.4