Mercurial > repos > brasset_jensen > srnapipe

comparison test-data/res_files/reads-sample-small.fastq/subgroups/bonafide_reads/bonafide_reads-TEs_reads_counts_nomismatches.txt @ 63:11708af40030 draft

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planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit a461e07471d3897046e14389171a2c03d09b912d
author pierre.pouchin
date Thu, 24 Jan 2019 13:09:46 -0500
parents 9185ca0a7b43
children
comparison
equal deleted inserted replaced
62:e6c4f3e96e47 63:11708af40030
1 ID reads counts RPKM per million of piRNAs per million of miRNAs per million of bonafide reads sense reads counts reverse reads counts % of sense 1U % of sense 10A % of reverse 1U % of reverse 10A 1 ID reads counts RPKM per million of piRNAs per million of miRNAs per million of bonafide reads sense reads counts reverse reads counts % of sense 1U % of sense 10A % of reverse 1U % of reverse 10A
2 BATUMI_I 59 189.79 2558.99 936507.94 1932.53 10 49 60 20 42.8571428571429 14.2857142857143 2 BATUMI_I 11 348.13 4708.90 1222222.22 3571.43 1 10 0 0 60 20
3 BATUMI_LTR 6 565.03 260.24 95238.10 196.53 1 5 100 0 0 60 3 BATUMI_LTR 0 0.00 0.00 0.00 0.00 0 0 0 0 0 0
4 BS2 7010 38034.19 304042.33 111269841.27 229610.22 1430 5580 44.1258741258741 40.4895104895105 16.0573476702509 31.326164874552 4 BS2 732 39075.58 313356.16 81333333.33 237662.34 146 586 43.1506849315069 42.4657534246575 14.5051194539249 32.0819112627986
5 COPIA_DM_I 0 0.00 0.00 0.00 0.00 0 0 0 0 0 0 5 COPIA_DM_I 0 0.00 0.00 0.00 0.00 0 0 0 0 0 0
6 COPIA_DM_LTR 0 0.00 0.00 0.00 0.00 0 0 0 0 0 0 6 COPIA_DM_LTR 0 0.00 0.00 0.00 0.00 0 0 0 0 0 0
7 DMCR1A 315 1805.07 13662.39 5000000.00 10317.72 86 229 50 52.3255813953488 19.6506550218341 34.061135371179 7 DMCR1A 45 2537.08 19263.70 5000000.00 14610.39 11 34 45.4545454545455 54.5454545454545 17.6470588235294 52.9411764705882
8 DMRT1B 161 795.67 6983.00 2555555.56 5273.50 67 94 23.8805970149254 14.9253731343284 1.06382978723404 6.38297872340426 8 DMRT1B 16 777.98 6849.32 1777777.78 5194.81 9 7 33.3333333333333 22.2222222222222 0 0
9 FW 15077 82308.96 653929.56 239317460.32 493842.12 2649 12428 39.7885994714987 57.115892789732 14.9581589958159 25.9736079819762 9 FW 1502 80675.24 642979.45 166888888.89 487662.34 274 1228 37.956204379562 62.4087591240876 14.9837133550489 27.3615635179153
10 G6_DM 2055 25777.83 89130.81 32619047.62 67310.84 427 1628 54.8009367681499 49.1803278688525 2.08845208845209 29.8525798525799 10 G6_DM 204 25176.93 87328.77 22666666.67 66233.77 53 151 62.2641509433962 54.7169811320755 1.98675496688742 33.112582781457
11 Gypsy2-I_DM 0 0.00 0.00 0.00 0.00 0 0 0 0 0 0 11 Gypsy2-I_DM 0 0.00 0.00 0.00 0.00 0 0 0 0 0 0
12 Gypsy2-LTR_DM 191 14474.61 8284.18 3031746.03 6256.14 82 109 54.8780487804878 31.7073170731707 10.0917431192661 18.348623853211 12 Gypsy2-LTR_DM 21 15657.81 8989.73 2333333.33 6818.18 6 15 66.6666666666667 66.6666666666667 0 6.66666666666667
13 I_DM 10 47.66 433.73 158730.16 327.55 6 4 50 33.3333333333333 50 0 13 I_DM 2 93.79 856.16 222222.22 649.35 2 0 100 50 0 0
14 MAX_I 84 271.88 3643.30 1333333.33 2751.39 15 69 86.6666666666667 6.66666666666667 73.9130434782609 15.9420289855072 14 MAX_I 10 318.44 4280.82 1111111.11 3246.75 0 10 0 0 80 0
15 MAX_LTR 57 4548.41 2472.24 904761.90 1867.02 22 35 36.3636363636364 9.09090909090909 0 54.2857142857143 15 MAX_LTR 11 8636.07 4708.90 1222222.22 3571.43 5 6 20 0 0 33.3333333333333
16 PROTOP 83 474.56 3599.93 1317460.32 2718.64 26 57 42.3076923076923 65.3846153846154 17.5438596491228 36.8421052631579 16 PROTOP 7 393.78 2996.58 777777.78 2272.73 1 6 100 100 16.6666666666667 33.3333333333333
17 ZAM_I 0 0.00 0.00 0.00 0.00 0 0 0 0 0 0 17 ZAM_I 0 0.00 0.00 0.00 0.00 0 0 0 0 0 0
18 ZAM_LTR 0 0.00 0.00 0.00 0.00 0 0 0 0 0 0 18 ZAM_LTR 0 0.00 0.00 0.00 0.00 0 0 0 0 0 0