Mercurial > repos > calkan > mrcanavar
comparison mrcanavar-0.34/Changelog @ 0:86522a0b5f59 default tip
Uploaded source code for mrCaNaVaR
| author | calkan |
|---|---|
| date | Tue, 21 Feb 2012 10:44:13 -0500 |
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| -1:000000000000 | 0:86522a0b5f59 |
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| 1 December 7, 2011 | |
| 2 version 0.34: | |
| 3 * Segmentation fault with some kernels & gcc due to an unallocated string is fixed. | |
| 4 | |
| 5 October 13, 2011 | |
| 6 version 0.33: | |
| 7 * Compilation errors in MacOSX are fixed. | |
| 8 * Compilation error in x86_64 systems with gcc version > 4.33 is fixed. | |
| 9 | |
| 10 July 22, 2011 | |
| 11 version 0.32: | |
| 12 * Bug in parsing chromosome names that end with whitespace is fixed. | |
| 13 | |
| 14 June 22, 2011 | |
| 15 version 0.31: | |
| 16 * Bug causing infinite loop in control region selection is fixed. | |
| 17 | |
| 18 April 16, 2011 | |
| 19 version 0.3: | |
| 20 * Bug in GC normalization fixed | |
| 21 * Bug in CN estimation in chrX and chrY for male mammals is fixed. | |
| 22 | |
| 23 March 3, 2011 | |
| 24 GC counting bug in LW when an assembly gap is 1 character is fixed. (version 0.22) | |
| 25 | |
| 26 March 2, 2011 | |
| 27 Bug causing segmentation fault when CW_SIZE is set to a small value is fixed. (version 0.21) | |
| 28 | |
| 29 February 25, 2011 | |
| 30 A bug in GC normalization is fixed. (version 0.2) | |
| 31 | |
| 32 January 23, 2011 | |
| 33 SW normalization implemented (copy paste from LW ;-) ) | |
| 34 | |
| 35 December 27, 2010 | |
| 36 LW normalization implemented | |
| 37 | |
| 38 December 21, 2010 | |
| 39 a bug in handling file names is fixed | |
| 40 | |
| 41 December 14, 2010 | |
| 42 fixes to control selection: normalization is done AFTER controls are selected | |
| 43 Multiplicative GC scaling option (--multgc) | |
| 44 | |
| 45 November 18, 2010 | |
| 46 added removing low coverage windows from controls | |
| 47 | |
| 48 November 14, 2010 | |
| 49 version 0.1-rc | |
| 50 added iteration until min >= mean - 3std ; and 2std for chrX | |
| 51 | |
| 52 November 11, 2010 | |
| 53 version 0.1-alpha |