diff mrcanavar-0.34/Changelog @ 0:86522a0b5f59 default tip

Uploaded source code for mrCaNaVaR
author calkan
date Tue, 21 Feb 2012 10:44:13 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/mrcanavar-0.34/Changelog	Tue Feb 21 10:44:13 2012 -0500
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+December 7, 2011
+	version 0.34:
+		 * Segmentation fault with some kernels & gcc due to an unallocated string is fixed.
+
+October 13, 2011
+	version 0.33:
+		 * Compilation errors in MacOSX are fixed.
+    		 * Compilation error in x86_64 systems with gcc version > 4.33 is fixed.
+
+July 22, 2011
+	version 0.32:
+		* Bug in parsing chromosome names that end with whitespace is fixed.
+
+June 22, 2011
+	version 0.31:
+		* Bug causing infinite loop in control region selection is fixed.
+
+April 16, 2011
+	version 0.3:
+		* Bug in GC normalization fixed
+		* Bug in CN estimation in chrX and chrY for male mammals is fixed.
+
+March 3, 2011
+	GC counting bug in LW when an assembly gap is 1 character is fixed. (version 0.22)
+
+March 2, 2011
+	Bug causing segmentation fault when CW_SIZE is set to a small value is fixed.  (version 0.21)
+
+February 25, 2011
+	A bug in GC normalization is fixed. (version 0.2)
+
+January 23, 2011
+	SW normalization implemented  (copy paste from LW ;-) )
+
+December 27, 2010
+	LW normalization implemented
+
+December 21, 2010
+	a bug in handling file names is fixed
+
+December 14, 2010
+	fixes to control selection: normalization is done AFTER controls are selected
+	Multiplicative GC scaling option (--multgc)
+
+November 18, 2010
+	added removing low coverage windows from controls
+
+November 14, 2010
+	version 0.1-rc
+	added iteration until min >= mean - 3std ; and 2std for chrX
+
+November 11, 2010
+	version 0.1-alpha