Mercurial > repos > calkan > mrcanavar
diff mrcanavar-0.34/Changelog @ 0:86522a0b5f59 default tip
Uploaded source code for mrCaNaVaR
author | calkan |
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date | Tue, 21 Feb 2012 10:44:13 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/mrcanavar-0.34/Changelog Tue Feb 21 10:44:13 2012 -0500 @@ -0,0 +1,53 @@ +December 7, 2011 + version 0.34: + * Segmentation fault with some kernels & gcc due to an unallocated string is fixed. + +October 13, 2011 + version 0.33: + * Compilation errors in MacOSX are fixed. + * Compilation error in x86_64 systems with gcc version > 4.33 is fixed. + +July 22, 2011 + version 0.32: + * Bug in parsing chromosome names that end with whitespace is fixed. + +June 22, 2011 + version 0.31: + * Bug causing infinite loop in control region selection is fixed. + +April 16, 2011 + version 0.3: + * Bug in GC normalization fixed + * Bug in CN estimation in chrX and chrY for male mammals is fixed. + +March 3, 2011 + GC counting bug in LW when an assembly gap is 1 character is fixed. (version 0.22) + +March 2, 2011 + Bug causing segmentation fault when CW_SIZE is set to a small value is fixed. (version 0.21) + +February 25, 2011 + A bug in GC normalization is fixed. (version 0.2) + +January 23, 2011 + SW normalization implemented (copy paste from LW ;-) ) + +December 27, 2010 + LW normalization implemented + +December 21, 2010 + a bug in handling file names is fixed + +December 14, 2010 + fixes to control selection: normalization is done AFTER controls are selected + Multiplicative GC scaling option (--multgc) + +November 18, 2010 + added removing low coverage windows from controls + +November 14, 2010 + version 0.1-rc + added iteration until min >= mean - 3std ; and 2std for chrX + +November 11, 2010 + version 0.1-alpha