Mercurial > repos > card > rgi
annotate data_managers/data_manager_conf.xml @ 2:a671367c326e draft
"planemo upload for repository https://github.com/arpcard/rgi commit 481838067117d0c8ae84bc92ee58f47cfc18aa5f"
| author | card |
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| date | Tue, 17 Nov 2020 00:23:36 +0000 |
| parents | 715bc9aeef69 |
| children | ce852ee2c394 |
| rev | line source |
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715bc9aeef69
planemo upload for repository https://github.com/arpcard/rgi commit 7a78289be23c5a14ae39f454610fa8eca3f05188
card
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1 <?xml version="1.0"?> |
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715bc9aeef69
planemo upload for repository https://github.com/arpcard/rgi commit 7a78289be23c5a14ae39f454610fa8eca3f05188
card
parents:
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2 <data_managers> |
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a671367c326e
"planemo upload for repository https://github.com/arpcard/rgi commit 481838067117d0c8ae84bc92ee58f47cfc18aa5f"
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3 <data_manager tool_file="data_manager_rgi_build_db/data_manager/rgi_database_builder.xml" id="rgi_database_builder" version="1.1.0"> |
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715bc9aeef69
planemo upload for repository https://github.com/arpcard/rgi commit 7a78289be23c5a14ae39f454610fa8eca3f05188
card
parents:
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changeset
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4 <!-- Defines a Data Table to be modified --> |
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715bc9aeef69
planemo upload for repository https://github.com/arpcard/rgi commit 7a78289be23c5a14ae39f454610fa8eca3f05188
card
parents:
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changeset
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5 <data_table name="rgi_databases"> |
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715bc9aeef69
planemo upload for repository https://github.com/arpcard/rgi commit 7a78289be23c5a14ae39f454610fa8eca3f05188
card
parents:
diff
changeset
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6 <!-- Handle the output of the Data Manager Tool --> |
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715bc9aeef69
planemo upload for repository https://github.com/arpcard/rgi commit 7a78289be23c5a14ae39f454610fa8eca3f05188
card
parents:
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changeset
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7 <output> |
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715bc9aeef69
planemo upload for repository https://github.com/arpcard/rgi commit 7a78289be23c5a14ae39f454610fa8eca3f05188
card
parents:
diff
changeset
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8 <!-- Columns that will be specified by the Data Manager Tool --> |
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715bc9aeef69
planemo upload for repository https://github.com/arpcard/rgi commit 7a78289be23c5a14ae39f454610fa8eca3f05188
card
parents:
diff
changeset
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9 <column name="value" /> |
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715bc9aeef69
planemo upload for repository https://github.com/arpcard/rgi commit 7a78289be23c5a14ae39f454610fa8eca3f05188
card
parents:
diff
changeset
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10 <column name="name" /> |
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715bc9aeef69
planemo upload for repository https://github.com/arpcard/rgi commit 7a78289be23c5a14ae39f454610fa8eca3f05188
card
parents:
diff
changeset
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11 <!-- The value of this column will be modified based upon data in "out_file" --> |
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715bc9aeef69
planemo upload for repository https://github.com/arpcard/rgi commit 7a78289be23c5a14ae39f454610fa8eca3f05188
card
parents:
diff
changeset
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12 <column name="path" output_ref="out_file" > |
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715bc9aeef69
planemo upload for repository https://github.com/arpcard/rgi commit 7a78289be23c5a14ae39f454610fa8eca3f05188
card
parents:
diff
changeset
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13 <!-- Moving a file from the extra files path of "out_file" --> |
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715bc9aeef69
planemo upload for repository https://github.com/arpcard/rgi commit 7a78289be23c5a14ae39f454610fa8eca3f05188
card
parents:
diff
changeset
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14 <move type="directory" relativize_symlinks="True"> |
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715bc9aeef69
planemo upload for repository https://github.com/arpcard/rgi commit 7a78289be23c5a14ae39f454610fa8eca3f05188
card
parents:
diff
changeset
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15 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">rgi_databases/${value}/${path}</target> |
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715bc9aeef69
planemo upload for repository https://github.com/arpcard/rgi commit 7a78289be23c5a14ae39f454610fa8eca3f05188
card
parents:
diff
changeset
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16 </move> |
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715bc9aeef69
planemo upload for repository https://github.com/arpcard/rgi commit 7a78289be23c5a14ae39f454610fa8eca3f05188
card
parents:
diff
changeset
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17 <!-- Store this value in the final Data Table --> |
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715bc9aeef69
planemo upload for repository https://github.com/arpcard/rgi commit 7a78289be23c5a14ae39f454610fa8eca3f05188
card
parents:
diff
changeset
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18 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/rgi_databases/${value}/${path}</value_translation> |
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715bc9aeef69
planemo upload for repository https://github.com/arpcard/rgi commit 7a78289be23c5a14ae39f454610fa8eca3f05188
card
parents:
diff
changeset
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19 <value_translation type="function">abspath</value_translation> |
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715bc9aeef69
planemo upload for repository https://github.com/arpcard/rgi commit 7a78289be23c5a14ae39f454610fa8eca3f05188
card
parents:
diff
changeset
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20 </column> |
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715bc9aeef69
planemo upload for repository https://github.com/arpcard/rgi commit 7a78289be23c5a14ae39f454610fa8eca3f05188
card
parents:
diff
changeset
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21 </output> |
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715bc9aeef69
planemo upload for repository https://github.com/arpcard/rgi commit 7a78289be23c5a14ae39f454610fa8eca3f05188
card
parents:
diff
changeset
|
22 </data_table> |
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715bc9aeef69
planemo upload for repository https://github.com/arpcard/rgi commit 7a78289be23c5a14ae39f454610fa8eca3f05188
card
parents:
diff
changeset
|
23 </data_manager> |
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715bc9aeef69
planemo upload for repository https://github.com/arpcard/rgi commit 7a78289be23c5a14ae39f454610fa8eca3f05188
card
parents:
diff
changeset
|
24 </data_managers> |