view db2db.xml @ 3:d4e959143115 draft

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author cheanney
date Tue, 07 Jul 2015 13:02:00 -0400
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<tool id="db2db" name="db2db" version="1.0">
    <description></description>
    <command interpreter="/usr/bin/php">
        /mnt/webrepo/fr-s-bsg-bio-d/htdocs/biodbnet_wrapper/db2dbRestClient.php input='$input' inputValues='$inputValues' outputs='$output' taxonId='$taxon' fileType='$filetype' > $result
    </command>
    <inputs>
        <param name="input" type="text" size="30" label="Enter an input ID name" />
        <param name="inputValues" type="text" area="true" size="4x40" label="Paste input ID value(s)" />
        <param name="output" type="text" size="30" label="Enter an output ID name(s)" />
        <param name="taxon" size="30" type="text" label="Enter a taxon id (optional)" />
        <param name="filetype" type="select" label="fileType options">
        <option value="table">table</option>
        <option value="xml">xml</option>
        <option value="json">json</option>
      </param>
    </inputs>
				
    <outputs>
        <data format="html" name="result" label="db2db.results">
        	<change_format>
            		<when input="filetype" value=“xml” format=“xml” />
	    		<when input="filetype" value=“json” format=“json” />
        	</change_format>
	</data>
    </outputs>


    <help>

.. class:: infomark

**What it does**

Add instructions here.

-----


**Usage**
/mnt/webrepo/fr-s-bsg-bio-d/htdocs/biodbnet_wrapper/db2dbClient.php input='Ensembl Gene ID' inputValues='ENSG00000121410, ENSG00000171428' ouptput='Gene Symbol, Ensembl Protein ID' taxonId='9606'(optional)
    </help>
</tool>