Mercurial > repos > chrisb > gap_all_glycan_tools
view get_data/cfg_array/README_CFG_array.md @ 0:89592faa2875 draft
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author | chrisb |
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date | Wed, 23 Mar 2016 14:35:56 -0400 |
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[TOC] # 1. cfg_get_glycan_array_data.py Retrieve glycan array data from the CFG. With focus on retrieving the xls data and also pull the metadata. ## Works with Galaxy? Not properly tested yet!! The xml in this directory is not correct. ## Command line usage **NOT RECOMMENDED** This will download all xls and will take a while. ``` ../../virtualpy/bin/activate python cfg_get_glycan_array_data.py ``` **RECOMMENDED** This will get all metadata and not download xls ``` ../../virtualpy/bin/activate python cfg_get_glycan_array_data.py -d ``` This metadata can be viewed using the [CFG glycan array explorer](https://bitbucket.org/rxncor/cfg-data-chart) ## Help ``` ../../virtualpy/bin/activate python cfg_get_glycan_from_cells.py -h ``` ## Unit Testing? Not yet! Although some testing has been done using *.html in ./info and ./templates Also passed json metadata to [CFG glycan array explorer](https://bitbucket.org/rxncor/cfg-data-chart) In principle: ``` ../../virtualpy/bin/activate python test_cfg_get_glycan_from_cells.py ```