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annotate c3s.sh @ 1:bd153c794da1 draft

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planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit de74da48cc04c0cb261d07c451d00598beb834d9
author climate
date Thu, 08 Feb 2024 17:58:54 +0000
parents 250554670f72
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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250554670f72 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
parents:
diff changeset
1 #!/usr/bin/env bash
250554670f72 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
parents:
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2
250554670f72 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
parents:
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3 if [ -f download.tar.gz ]; then
250554670f72 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
parents:
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4 tar zxvf download.tar.gz
250554670f72 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
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5 cat *.grib > tmp.grib
250554670f72 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
parents:
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6 cdo setgridtype,regular tmp.grib tmpg.grib
250554670f72 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
parents:
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7 cdo -f nc -t ecmwf copy tmpg.grib tmp.nc
250554670f72 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
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8 elif [ -f download.zip ]; then
250554670f72 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
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9 unzip download.zip
1
bd153c794da1 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit de74da48cc04c0cb261d07c451d00598beb834d9
climate
parents: 0
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10 files=(*.nc)
bd153c794da1 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit de74da48cc04c0cb261d07c451d00598beb834d9
climate
parents: 0
diff changeset
11 if [ -e "${files[0]}" ]; then
bd153c794da1 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit de74da48cc04c0cb261d07c451d00598beb834d9
climate
parents: 0
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12 mv ${files[0]} tmp.nc
bd153c794da1 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit de74da48cc04c0cb261d07c451d00598beb834d9
climate
parents: 0
diff changeset
13 else
bd153c794da1 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit de74da48cc04c0cb261d07c451d00598beb834d9
climate
parents: 0
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14 cat *.grib > tmp.grib
bd153c794da1 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit de74da48cc04c0cb261d07c451d00598beb834d9
climate
parents: 0
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15 cdo setgridtype,regular tmp.grib tmpg.grib
bd153c794da1 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit de74da48cc04c0cb261d07c451d00598beb834d9
climate
parents: 0
diff changeset
16 cdo -f nc -t ecmwf copy tmpg.grib tmp.nc
bd153c794da1 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit de74da48cc04c0cb261d07c451d00598beb834d9
climate
parents: 0
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17 fi
0
250554670f72 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
parents:
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18 elif [ -f download.grib ]; then
250554670f72 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
parents:
diff changeset
19 cdo -f nc -t ecmwf copy download.grib tmp.nc
250554670f72 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
parents:
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20 elif [ -f download.nc ]; then
250554670f72 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
parents:
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21 mv download.nc tmp.nc
250554670f72 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
parents:
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22 else
250554670f72 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
parents:
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23 echo "No data found! Check your request and/or credentials."
250554670f72 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
parents:
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24 fi