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annotate cpt_lipop_conv/test-data/LipoToGFF_In.gff3 @ 0:adde21b6bdb3 draft

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author cpt
date Fri, 13 May 2022 05:18:31 +0000
parents
children
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0
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cpt
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1 ##gff-version 3
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2 ##sequence-region testseq_2018-03-08 1 9216
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cpt
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3 testseq_2018-03-08 cpt.fixModel gene 52 147 . - . ID=ORF.0.472_0.8077298255
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cpt
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4 testseq_2018-03-08 cpt.fixModel mRNA 52 147 . - . ID=ORF.0.472_0.8077298255.mRNA;Parent=ORF.0.472_0.8077298255
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cpt
parents:
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5 testseq_2018-03-08 getOrfsOrCds CDS 52 147 . - 0 ID=ORF.0.472_0.8077298255.CDS;Parent=ORF.0.472_0.8077298255.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
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6 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 160 162 . - . ID=ORF.0.472_0.8077298255.rbs-0;Parent=ORF.0.472_0.8077298255
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cpt
parents:
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7 testseq_2018-03-08 cpt.fixModel gene 154 339 . - . ID=ORF.0.465_0.466377183402
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cpt
parents:
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8 testseq_2018-03-08 cpt.fixModel mRNA 154 339 . - . ID=ORF.0.465_0.466377183402.mRNA;Parent=ORF.0.465_0.466377183402
adde21b6bdb3 Uploaded
cpt
parents:
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9 testseq_2018-03-08 getOrfsOrCds CDS 154 339 . - 0 ID=ORF.0.465_0.466377183402.CDS;Parent=ORF.0.465_0.466377183402.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
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10 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 347 349 . - . ID=ORF.0.465_0.466377183402.rbs-0;Parent=ORF.0.465_0.466377183402
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cpt
parents:
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11 testseq_2018-03-08 cpt.fixModel gene 154 324 . - . ID=ORF.0.466_0.685859290271
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cpt
parents:
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12 testseq_2018-03-08 cpt.fixModel mRNA 154 324 . - . ID=ORF.0.466_0.685859290271.mRNA;Parent=ORF.0.466_0.685859290271
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cpt
parents:
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13 testseq_2018-03-08 getOrfsOrCds CDS 154 324 . - 0 ID=ORF.0.466_0.685859290271.CDS;Parent=ORF.0.466_0.685859290271.mRNA
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cpt
parents:
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14 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 335 337 . - . ID=ORF.0.466_0.685859290271.rbs-0;Parent=ORF.0.466_0.685859290271
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parents:
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15 testseq_2018-03-08 cpt.fixModel gene 154 297 . - . ID=ORF.0.468_0.803001272192
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parents:
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16 testseq_2018-03-08 cpt.fixModel mRNA 154 297 . - . ID=ORF.0.468_0.803001272192.mRNA;Parent=ORF.0.468_0.803001272192
adde21b6bdb3 Uploaded
cpt
parents:
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17 testseq_2018-03-08 getOrfsOrCds CDS 154 297 . - 0 ID=ORF.0.468_0.803001272192.CDS;Parent=ORF.0.468_0.803001272192.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
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18 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 306 311 . - . ID=ORF.0.468_0.803001272192.rbs-0;Parent=ORF.0.468_0.803001272192
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parents:
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19 testseq_2018-03-08 cpt.fixModel gene 314 490 . - . ID=ORF.0.708_0.889453606077
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parents:
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20 testseq_2018-03-08 cpt.fixModel mRNA 314 490 . - . ID=ORF.0.708_0.889453606077.mRNA;Parent=ORF.0.708_0.889453606077
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cpt
parents:
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21 testseq_2018-03-08 getOrfsOrCds CDS 314 490 . - 0 ID=ORF.0.708_0.889453606077.CDS;Parent=ORF.0.708_0.889453606077.mRNA
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cpt
parents:
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22 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 500 502 . - . ID=ORF.0.708_0.889453606077.rbs-0;Parent=ORF.0.708_0.889453606077
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cpt
parents:
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23 testseq_2018-03-08 cpt.fixModel gene 487 672 . - . ID=ORF.0.458_0.61399204562
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cpt
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24 testseq_2018-03-08 cpt.fixModel mRNA 487 672 . - . ID=ORF.0.458_0.61399204562.mRNA;Parent=ORF.0.458_0.61399204562
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cpt
parents:
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25 testseq_2018-03-08 getOrfsOrCds CDS 487 672 . - 0 ID=ORF.0.458_0.61399204562.CDS;Parent=ORF.0.458_0.61399204562.mRNA
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cpt
parents:
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26 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 678 681 . - . ID=ORF.0.458_0.61399204562.rbs-0;Parent=ORF.0.458_0.61399204562
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cpt
parents:
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27 testseq_2018-03-08 cpt.fixModel gene 487 666 . - . ID=ORF.0.459_0.323250347541
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28 testseq_2018-03-08 cpt.fixModel mRNA 487 666 . - . ID=ORF.0.459_0.323250347541.mRNA;Parent=ORF.0.459_0.323250347541
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cpt
parents:
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29 testseq_2018-03-08 getOrfsOrCds CDS 487 666 . - 0 ID=ORF.0.459_0.323250347541.CDS;Parent=ORF.0.459_0.323250347541.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
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30 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 678 681 . - . ID=ORF.0.459_0.323250347541.rbs-0;Parent=ORF.0.459_0.323250347541
adde21b6bdb3 Uploaded
cpt
parents:
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31 testseq_2018-03-08 cpt.fixModel gene 487 657 . - . ID=ORF.0.460_0.509039455004
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cpt
parents:
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32 testseq_2018-03-08 cpt.fixModel mRNA 487 657 . - . ID=ORF.0.460_0.509039455004.mRNA;Parent=ORF.0.460_0.509039455004
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cpt
parents:
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33 testseq_2018-03-08 getOrfsOrCds CDS 487 657 . - 0 ID=ORF.0.460_0.509039455004.CDS;Parent=ORF.0.460_0.509039455004.mRNA
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cpt
parents:
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34 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 665 670 . - . ID=ORF.0.460_0.509039455004.rbs-0;Parent=ORF.0.460_0.509039455004
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cpt
parents:
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35 testseq_2018-03-08 cpt.fixModel gene 487 654 . - . ID=ORF.0.461_0.392081904542
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cpt
parents:
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36 testseq_2018-03-08 cpt.fixModel mRNA 487 654 . - . ID=ORF.0.461_0.392081904542.mRNA;Parent=ORF.0.461_0.392081904542
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cpt
parents:
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37 testseq_2018-03-08 getOrfsOrCds CDS 487 654 . - 0 ID=ORF.0.461_0.392081904542.CDS;Parent=ORF.0.461_0.392081904542.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
38 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 665 669 . - . ID=ORF.0.461_0.392081904542.rbs-0;Parent=ORF.0.461_0.392081904542
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cpt
parents:
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39 testseq_2018-03-08 cpt.fixModel gene 644 904 . - . ID=ORF.0.699_0.764949625216
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cpt
parents:
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40 testseq_2018-03-08 cpt.fixModel mRNA 644 904 . - . ID=ORF.0.699_0.764949625216.mRNA;Parent=ORF.0.699_0.764949625216
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cpt
parents:
diff changeset
41 testseq_2018-03-08 getOrfsOrCds CDS 644 904 . - 0 ID=ORF.0.699_0.764949625216.CDS;Parent=ORF.0.699_0.764949625216.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
42 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 914 918 . - . ID=ORF.0.699_0.764949625216.rbs-0;Parent=ORF.0.699_0.764949625216
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cpt
parents:
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43 testseq_2018-03-08 cpt.fixModel gene 644 802 . - . ID=ORF.0.703_0.981371874022
adde21b6bdb3 Uploaded
cpt
parents:
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44 testseq_2018-03-08 cpt.fixModel mRNA 644 802 . - . ID=ORF.0.703_0.981371874022.mRNA;Parent=ORF.0.703_0.981371874022
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
45 testseq_2018-03-08 getOrfsOrCds CDS 644 802 . - 0 ID=ORF.0.703_0.981371874022.CDS;Parent=ORF.0.703_0.981371874022.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
46 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 811 814 . - . ID=ORF.0.703_0.981371874022.rbs-0;Parent=ORF.0.703_0.981371874022
adde21b6bdb3 Uploaded
cpt
parents:
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47 testseq_2018-03-08 cpt.fixModel gene 644 775 . - . ID=ORF.0.705_0.438813830323
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cpt
parents:
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48 testseq_2018-03-08 cpt.fixModel mRNA 644 775 . - . ID=ORF.0.705_0.438813830323.mRNA;Parent=ORF.0.705_0.438813830323
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cpt
parents:
diff changeset
49 testseq_2018-03-08 getOrfsOrCds CDS 644 775 . - 0 ID=ORF.0.705_0.438813830323.CDS;Parent=ORF.0.705_0.438813830323.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
50 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 788 790 . - . ID=ORF.0.705_0.438813830323.rbs-0;Parent=ORF.0.705_0.438813830323
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cpt
parents:
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51 testseq_2018-03-08 cpt.fixModel gene 932 2659 . - . ID=ORF.0.622_0.865794102081
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cpt
parents:
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52 testseq_2018-03-08 cpt.fixModel mRNA 932 2659 . - . ID=ORF.0.622_0.865794102081.mRNA;Parent=ORF.0.622_0.865794102081
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cpt
parents:
diff changeset
53 testseq_2018-03-08 getOrfsOrCds CDS 932 2659 . - 0 ID=ORF.0.622_0.865794102081.CDS;Parent=ORF.0.622_0.865794102081.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
54 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 2672 2674 . - . ID=ORF.0.622_0.865794102081.rbs-0;Parent=ORF.0.622_0.865794102081
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cpt
parents:
diff changeset
55 testseq_2018-03-08 cpt.fixModel gene 932 2650 . - . ID=ORF.0.623_0.846988205141
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cpt
parents:
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56 testseq_2018-03-08 cpt.fixModel mRNA 932 2650 . - . ID=ORF.0.623_0.846988205141.mRNA;Parent=ORF.0.623_0.846988205141
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cpt
parents:
diff changeset
57 testseq_2018-03-08 getOrfsOrCds CDS 932 2650 . - 0 ID=ORF.0.623_0.846988205141.CDS;Parent=ORF.0.623_0.846988205141.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
58 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 2659 2662 . - . ID=ORF.0.623_0.846988205141.rbs-0;Parent=ORF.0.623_0.846988205141
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cpt
parents:
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59 testseq_2018-03-08 cpt.fixModel gene 932 2605 . - . ID=ORF.0.625_0.0578111846669
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cpt
parents:
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60 testseq_2018-03-08 cpt.fixModel mRNA 932 2605 . - . ID=ORF.0.625_0.0578111846669.mRNA;Parent=ORF.0.625_0.0578111846669
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cpt
parents:
diff changeset
61 testseq_2018-03-08 getOrfsOrCds CDS 932 2605 . - 0 ID=ORF.0.625_0.0578111846669.CDS;Parent=ORF.0.625_0.0578111846669.mRNA
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cpt
parents:
diff changeset
62 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 2618 2620 . - . ID=ORF.0.625_0.0578111846669.rbs-0;Parent=ORF.0.625_0.0578111846669
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cpt
parents:
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63 testseq_2018-03-08 cpt.fixModel gene 932 2572 . - . ID=ORF.0.626_0.303786861772
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cpt
parents:
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64 testseq_2018-03-08 cpt.fixModel mRNA 932 2572 . - . ID=ORF.0.626_0.303786861772.mRNA;Parent=ORF.0.626_0.303786861772
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cpt
parents:
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65 testseq_2018-03-08 getOrfsOrCds CDS 932 2572 . - 0 ID=ORF.0.626_0.303786861772.CDS;Parent=ORF.0.626_0.303786861772.mRNA
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cpt
parents:
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66 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 2584 2586 . - . ID=ORF.0.626_0.303786861772.rbs-0;Parent=ORF.0.626_0.303786861772
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cpt
parents:
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67 testseq_2018-03-08 cpt.fixModel gene 932 2518 . - . ID=ORF.0.630_0.467112600707
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parents:
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68 testseq_2018-03-08 cpt.fixModel mRNA 932 2518 . - . ID=ORF.0.630_0.467112600707.mRNA;Parent=ORF.0.630_0.467112600707
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cpt
parents:
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69 testseq_2018-03-08 getOrfsOrCds CDS 932 2518 . - 0 ID=ORF.0.630_0.467112600707.CDS;Parent=ORF.0.630_0.467112600707.mRNA
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cpt
parents:
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70 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 2526 2528 . - . ID=ORF.0.630_0.467112600707.rbs-0;Parent=ORF.0.630_0.467112600707
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cpt
parents:
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71 testseq_2018-03-08 cpt.fixModel gene 932 2509 . - . ID=ORF.0.631_0.2883116125
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parents:
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72 testseq_2018-03-08 cpt.fixModel mRNA 932 2509 . - . ID=ORF.0.631_0.2883116125.mRNA;Parent=ORF.0.631_0.2883116125
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parents:
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73 testseq_2018-03-08 getOrfsOrCds CDS 932 2509 . - 0 ID=ORF.0.631_0.2883116125.CDS;Parent=ORF.0.631_0.2883116125.mRNA
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cpt
parents:
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74 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 2522 2524 . - . ID=ORF.0.631_0.2883116125.rbs-0;Parent=ORF.0.631_0.2883116125
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cpt
parents:
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75 testseq_2018-03-08 cpt.fixModel gene 932 2404 . - . ID=ORF.0.636_0.876600016398
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parents:
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76 testseq_2018-03-08 cpt.fixModel mRNA 932 2404 . - . ID=ORF.0.636_0.876600016398.mRNA;Parent=ORF.0.636_0.876600016398
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cpt
parents:
diff changeset
77 testseq_2018-03-08 getOrfsOrCds CDS 932 2404 . - 0 ID=ORF.0.636_0.876600016398.CDS;Parent=ORF.0.636_0.876600016398.mRNA
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cpt
parents:
diff changeset
78 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 2416 2418 . - . ID=ORF.0.636_0.876600016398.rbs-0;Parent=ORF.0.636_0.876600016398
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parents:
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79 testseq_2018-03-08 cpt.fixModel gene 932 2356 . - . ID=ORF.0.640_0.0888066128056
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parents:
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80 testseq_2018-03-08 cpt.fixModel mRNA 932 2356 . - . ID=ORF.0.640_0.0888066128056.mRNA;Parent=ORF.0.640_0.0888066128056
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cpt
parents:
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81 testseq_2018-03-08 getOrfsOrCds CDS 932 2356 . - 0 ID=ORF.0.640_0.0888066128056.CDS;Parent=ORF.0.640_0.0888066128056.mRNA
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cpt
parents:
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82 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 2366 2368 . - . ID=ORF.0.640_0.0888066128056.rbs-0;Parent=ORF.0.640_0.0888066128056
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cpt
parents:
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83 testseq_2018-03-08 cpt.fixModel gene 932 2098 . - . ID=ORF.0.655_0.212962186525
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cpt
parents:
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84 testseq_2018-03-08 cpt.fixModel mRNA 932 2098 . - . ID=ORF.0.655_0.212962186525.mRNA;Parent=ORF.0.655_0.212962186525
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parents:
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85 testseq_2018-03-08 getOrfsOrCds CDS 932 2098 . - 0 ID=ORF.0.655_0.212962186525.CDS;Parent=ORF.0.655_0.212962186525.mRNA
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cpt
parents:
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86 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 2108 2111 . - . ID=ORF.0.655_0.212962186525.rbs-0;Parent=ORF.0.655_0.212962186525
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87 testseq_2018-03-08 cpt.fixModel gene 932 2020 . - . ID=ORF.0.659_0.370352364369
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parents:
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88 testseq_2018-03-08 cpt.fixModel mRNA 932 2020 . - . ID=ORF.0.659_0.370352364369.mRNA;Parent=ORF.0.659_0.370352364369
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cpt
parents:
diff changeset
89 testseq_2018-03-08 getOrfsOrCds CDS 932 2020 . - 0 ID=ORF.0.659_0.370352364369.CDS;Parent=ORF.0.659_0.370352364369.mRNA
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cpt
parents:
diff changeset
90 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 2031 2034 . - . ID=ORF.0.659_0.370352364369.rbs-0;Parent=ORF.0.659_0.370352364369
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cpt
parents:
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91 testseq_2018-03-08 cpt.fixModel gene 932 1996 . - . ID=ORF.0.660_0.561664408596
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cpt
parents:
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92 testseq_2018-03-08 cpt.fixModel mRNA 932 1996 . - . ID=ORF.0.660_0.561664408596.mRNA;Parent=ORF.0.660_0.561664408596
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cpt
parents:
diff changeset
93 testseq_2018-03-08 getOrfsOrCds CDS 932 1996 . - 0 ID=ORF.0.660_0.561664408596.CDS;Parent=ORF.0.660_0.561664408596.mRNA
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cpt
parents:
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94 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 2009 2011 . - . ID=ORF.0.660_0.561664408596.rbs-0;Parent=ORF.0.660_0.561664408596
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cpt
parents:
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95 testseq_2018-03-08 cpt.fixModel gene 932 1924 . - . ID=ORF.0.662_0.547739243117
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cpt
parents:
diff changeset
96 testseq_2018-03-08 cpt.fixModel mRNA 932 1924 . - . ID=ORF.0.662_0.547739243117.mRNA;Parent=ORF.0.662_0.547739243117
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parents:
diff changeset
97 testseq_2018-03-08 getOrfsOrCds CDS 932 1924 . - 0 ID=ORF.0.662_0.547739243117.CDS;Parent=ORF.0.662_0.547739243117.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
98 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 1930 1933 . - . ID=ORF.0.662_0.547739243117.rbs-0;Parent=ORF.0.662_0.547739243117
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
99 testseq_2018-03-08 cpt.fixModel gene 932 1780 . - . ID=ORF.0.667_0.381504311163
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
100 testseq_2018-03-08 cpt.fixModel mRNA 932 1780 . - . ID=ORF.0.667_0.381504311163.mRNA;Parent=ORF.0.667_0.381504311163
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
101 testseq_2018-03-08 getOrfsOrCds CDS 932 1780 . - 0 ID=ORF.0.667_0.381504311163.CDS;Parent=ORF.0.667_0.381504311163.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
102 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 1787 1789 . - . ID=ORF.0.667_0.381504311163.rbs-0;Parent=ORF.0.667_0.381504311163
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
103 testseq_2018-03-08 cpt.fixModel gene 1303 1413 . - . ID=ORF.0.457_0.112605087319
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
104 testseq_2018-03-08 cpt.fixModel mRNA 1303 1413 . - . ID=ORF.0.457_0.112605087319.mRNA;Parent=ORF.0.457_0.112605087319
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
105 testseq_2018-03-08 getOrfsOrCds CDS 1303 1413 . - 0 ID=ORF.0.457_0.112605087319.CDS;Parent=ORF.0.457_0.112605087319.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
106 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 1421 1424 . - . ID=ORF.0.457_0.112605087319.rbs-0;Parent=ORF.0.457_0.112605087319
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
107 testseq_2018-03-08 cpt.fixModel gene 2673 3473 . - . ID=ORF.0.518_0.704496503167
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
108 testseq_2018-03-08 cpt.fixModel mRNA 2673 3473 . - . ID=ORF.0.518_0.704496503167.mRNA;Parent=ORF.0.518_0.704496503167
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
109 testseq_2018-03-08 getOrfsOrCds CDS 2673 3473 . - 0 ID=ORF.0.518_0.704496503167.CDS;Parent=ORF.0.518_0.704496503167.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
110 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 3484 3488 . - . ID=ORF.0.518_0.704496503167.rbs-0;Parent=ORF.0.518_0.704496503167
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
111 testseq_2018-03-08 cpt.fixModel gene 2673 3140 . - . ID=ORF.0.531_0.284124356131
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
112 testseq_2018-03-08 cpt.fixModel mRNA 2673 3140 . - . ID=ORF.0.531_0.284124356131.mRNA;Parent=ORF.0.531_0.284124356131
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
113 testseq_2018-03-08 getOrfsOrCds CDS 2673 3140 . - 0 ID=ORF.0.531_0.284124356131.CDS;Parent=ORF.0.531_0.284124356131.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
114 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 3153 3155 . - . ID=ORF.0.531_0.284124356131.rbs-0;Parent=ORF.0.531_0.284124356131
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
115 testseq_2018-03-08 cpt.fixModel gene 2673 3077 . - . ID=ORF.0.534_0.230486359187
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
116 testseq_2018-03-08 cpt.fixModel mRNA 2673 3077 . - . ID=ORF.0.534_0.230486359187.mRNA;Parent=ORF.0.534_0.230486359187
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
117 testseq_2018-03-08 getOrfsOrCds CDS 2673 3077 . - 0 ID=ORF.0.534_0.230486359187.CDS;Parent=ORF.0.534_0.230486359187.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
118 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 3083 3085 . - . ID=ORF.0.534_0.230486359187.rbs-0;Parent=ORF.0.534_0.230486359187
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
119 testseq_2018-03-08 cpt.fixModel gene 2673 2765 . - . ID=ORF.0.549_0.435747482069
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
120 testseq_2018-03-08 cpt.fixModel mRNA 2673 2765 . - . ID=ORF.0.549_0.435747482069.mRNA;Parent=ORF.0.549_0.435747482069
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
121 testseq_2018-03-08 getOrfsOrCds CDS 2673 2765 . - 0 ID=ORF.0.549_0.435747482069.CDS;Parent=ORF.0.549_0.435747482069.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
122 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 2774 2777 . - . ID=ORF.0.549_0.435747482069.rbs-0;Parent=ORF.0.549_0.435747482069
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
123 testseq_2018-03-08 cpt.fixModel gene 3362 3739 . - . ID=ORF.0.603_0.488926379773
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
124 testseq_2018-03-08 cpt.fixModel mRNA 3362 3739 . - . ID=ORF.0.603_0.488926379773.mRNA;Parent=ORF.0.603_0.488926379773
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
125 testseq_2018-03-08 getOrfsOrCds CDS 3362 3739 . - 0 ID=ORF.0.603_0.488926379773.CDS;Parent=ORF.0.603_0.488926379773.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
126 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 3749 3754 . - . ID=ORF.0.603_0.488926379773.rbs-0;Parent=ORF.0.603_0.488926379773
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
127 testseq_2018-03-08 cpt.fixModel gene 3362 3706 . - . ID=ORF.0.605_0.950422684088
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
128 testseq_2018-03-08 cpt.fixModel mRNA 3362 3706 . - . ID=ORF.0.605_0.950422684088.mRNA;Parent=ORF.0.605_0.950422684088
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
129 testseq_2018-03-08 getOrfsOrCds CDS 3362 3706 . - 0 ID=ORF.0.605_0.950422684088.CDS;Parent=ORF.0.605_0.950422684088.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
130 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 3719 3721 . - . ID=ORF.0.605_0.950422684088.rbs-0;Parent=ORF.0.605_0.950422684088
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
131 testseq_2018-03-08 cpt.fixModel gene 3362 3688 . - . ID=ORF.0.606_0.329949811104
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
132 testseq_2018-03-08 cpt.fixModel mRNA 3362 3688 . - . ID=ORF.0.606_0.329949811104.mRNA;Parent=ORF.0.606_0.329949811104
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
133 testseq_2018-03-08 getOrfsOrCds CDS 3362 3688 . - 0 ID=ORF.0.606_0.329949811104.CDS;Parent=ORF.0.606_0.329949811104.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
134 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 3699 3702 . - . ID=ORF.0.606_0.329949811104.rbs-0;Parent=ORF.0.606_0.329949811104
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
135 testseq_2018-03-08 cpt.fixModel gene 3362 3550 . - . ID=ORF.0.611_0.815705221168
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
136 testseq_2018-03-08 cpt.fixModel mRNA 3362 3550 . - . ID=ORF.0.611_0.815705221168.mRNA;Parent=ORF.0.611_0.815705221168
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
137 testseq_2018-03-08 getOrfsOrCds CDS 3362 3550 . - 0 ID=ORF.0.611_0.815705221168.CDS;Parent=ORF.0.611_0.815705221168.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
138 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 3559 3561 . - . ID=ORF.0.611_0.815705221168.rbs-0;Parent=ORF.0.611_0.815705221168
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
139 testseq_2018-03-08 cpt.fixModel gene 3362 3493 . - . ID=ORF.0.613_0.104890641676
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
140 testseq_2018-03-08 cpt.fixModel mRNA 3362 3493 . - . ID=ORF.0.613_0.104890641676.mRNA;Parent=ORF.0.613_0.104890641676
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
141 testseq_2018-03-08 getOrfsOrCds CDS 3362 3493 . - 0 ID=ORF.0.613_0.104890641676.CDS;Parent=ORF.0.613_0.104890641676.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
142 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 3506 3508 . - . ID=ORF.0.613_0.104890641676.rbs-0;Parent=ORF.0.613_0.104890641676
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
143 testseq_2018-03-08 cpt.fixModel gene 3433 3537 . + . ID=ORF.0.17_0.711047642618
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
144 testseq_2018-03-08 cpt.fixModel mRNA 3433 3537 . + . ID=ORF.0.17_0.711047642618.mRNA;Parent=ORF.0.17_0.711047642618
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
145 testseq_2018-03-08 getOrfsOrCds CDS 3433 3537 . + 0 ID=ORF.0.17_0.711047642618.CDS;Parent=ORF.0.17_0.711047642618.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
146 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 3419 3421 . + . ID=ORF.0.17_0.711047642618.rbs-0;Parent=ORF.0.17_0.711047642618
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
147 testseq_2018-03-08 cpt.fixModel gene 3986 4114 . + . ID=ORF.0.139_0.904626958426
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
148 testseq_2018-03-08 cpt.fixModel mRNA 3986 4114 . + . ID=ORF.0.139_0.904626958426.mRNA;Parent=ORF.0.139_0.904626958426
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
149 testseq_2018-03-08 getOrfsOrCds CDS 3986 4114 . + 0 ID=ORF.0.139_0.904626958426.CDS;Parent=ORF.0.139_0.904626958426.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
150 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 3971 3973 . + . ID=ORF.0.139_0.904626958426.rbs-0;Parent=ORF.0.139_0.904626958426
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
151 testseq_2018-03-08 cpt.fixModel gene 4006 4101 . - . ID=ORF.0.445_0.286571403109
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
152 testseq_2018-03-08 cpt.fixModel mRNA 4006 4101 . - . ID=ORF.0.445_0.286571403109.mRNA;Parent=ORF.0.445_0.286571403109
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
153 testseq_2018-03-08 getOrfsOrCds CDS 4006 4101 . - 0 ID=ORF.0.445_0.286571403109.CDS;Parent=ORF.0.445_0.286571403109.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
154 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 4108 4110 . - . ID=ORF.0.445_0.286571403109.rbs-0;Parent=ORF.0.445_0.286571403109
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
155 testseq_2018-03-08 cpt.fixModel gene 4071 4190 . + . ID=ORF.0.345_0.971616620883
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
156 testseq_2018-03-08 cpt.fixModel mRNA 4071 4190 . + . ID=ORF.0.345_0.971616620883.mRNA;Parent=ORF.0.345_0.971616620883
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
157 testseq_2018-03-08 getOrfsOrCds CDS 4071 4190 . + 0 ID=ORF.0.345_0.971616620883.CDS;Parent=ORF.0.345_0.971616620883.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
158 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 4057 4059 . + . ID=ORF.0.345_0.971616620883.rbs-0;Parent=ORF.0.345_0.971616620883
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
159 testseq_2018-03-08 cpt.fixModel gene 4095 4190 . + . ID=ORF.0.347_0.0208968983552
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
160 testseq_2018-03-08 cpt.fixModel mRNA 4095 4190 . + . ID=ORF.0.347_0.0208968983552.mRNA;Parent=ORF.0.347_0.0208968983552
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
161 testseq_2018-03-08 getOrfsOrCds CDS 4095 4190 . + 0 ID=ORF.0.347_0.0208968983552.CDS;Parent=ORF.0.347_0.0208968983552.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
162 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 4087 4089 . + . ID=ORF.0.347_0.0208968983552.rbs-0;Parent=ORF.0.347_0.0208968983552
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
163 testseq_2018-03-08 cpt.fixModel gene 4134 4229 . - . ID=ORF.0.517_0.929120702544
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
164 testseq_2018-03-08 cpt.fixModel mRNA 4134 4229 . - . ID=ORF.0.517_0.929120702544.mRNA;Parent=ORF.0.517_0.929120702544
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
165 testseq_2018-03-08 getOrfsOrCds CDS 4134 4229 . - 0 ID=ORF.0.517_0.929120702544.CDS;Parent=ORF.0.517_0.929120702544.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
166 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 4241 4243 . - . ID=ORF.0.517_0.929120702544.rbs-0;Parent=ORF.0.517_0.929120702544
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
167 testseq_2018-03-08 cpt.fixModel gene 4574 5500 . + . ID=ORF.0.146_0.351389104617
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
168 testseq_2018-03-08 cpt.fixModel mRNA 4574 5500 . + . ID=ORF.0.146_0.351389104617.mRNA;Parent=ORF.0.146_0.351389104617
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
169 testseq_2018-03-08 getOrfsOrCds CDS 4574 5500 . + 0 ID=ORF.0.146_0.351389104617.CDS;Parent=ORF.0.146_0.351389104617.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
170 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 4560 4563 . + . ID=ORF.0.146_0.351389104617.rbs-0;Parent=ORF.0.146_0.351389104617
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
171 testseq_2018-03-08 cpt.fixModel gene 5029 5181 . - . ID=ORF.0.439_0.445866101899
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
172 testseq_2018-03-08 cpt.fixModel mRNA 5029 5181 . - . ID=ORF.0.439_0.445866101899.mRNA;Parent=ORF.0.439_0.445866101899
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
173 testseq_2018-03-08 getOrfsOrCds CDS 5029 5181 . - 0 ID=ORF.0.439_0.445866101899.CDS;Parent=ORF.0.439_0.445866101899.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
174 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 5188 5192 . - . ID=ORF.0.439_0.445866101899.rbs-0;Parent=ORF.0.439_0.445866101899
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
175 testseq_2018-03-08 cpt.fixModel gene 5029 5160 . - . ID=ORF.0.440_0.915263915342
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
176 testseq_2018-03-08 cpt.fixModel mRNA 5029 5160 . - . ID=ORF.0.440_0.915263915342.mRNA;Parent=ORF.0.440_0.915263915342
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
177 testseq_2018-03-08 getOrfsOrCds CDS 5029 5160 . - 0 ID=ORF.0.440_0.915263915342.CDS;Parent=ORF.0.440_0.915263915342.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
178 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 5170 5172 . - . ID=ORF.0.440_0.915263915342.rbs-0;Parent=ORF.0.440_0.915263915342
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
179 testseq_2018-03-08 cpt.fixModel gene 5393 5500 . + . ID=ORF.0.183_0.0663532791257
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
180 testseq_2018-03-08 cpt.fixModel mRNA 5393 5500 . + . ID=ORF.0.183_0.0663532791257.mRNA;Parent=ORF.0.183_0.0663532791257
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
181 testseq_2018-03-08 getOrfsOrCds CDS 5393 5500 . + 0 ID=ORF.0.183_0.0663532791257.CDS;Parent=ORF.0.183_0.0663532791257.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
182 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 5381 5383 . + . ID=ORF.0.183_0.0663532791257.rbs-0;Parent=ORF.0.183_0.0663532791257
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
183 testseq_2018-03-08 cpt.fixModel gene 5570 5689 . + . ID=ORF.0.185_0.343675913625
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
184 testseq_2018-03-08 cpt.fixModel mRNA 5570 5689 . + . ID=ORF.0.185_0.343675913625.mRNA;Parent=ORF.0.185_0.343675913625
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
185 testseq_2018-03-08 getOrfsOrCds CDS 5570 5689 . + 0 ID=ORF.0.185_0.343675913625.CDS;Parent=ORF.0.185_0.343675913625.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
186 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 5562 5564 . + . ID=ORF.0.185_0.343675913625.rbs-0;Parent=ORF.0.185_0.343675913625
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
187 testseq_2018-03-08 cpt.fixModel gene 6095 6205 . - . ID=ORF.0.580_0.42130451371
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
188 testseq_2018-03-08 cpt.fixModel mRNA 6095 6205 . - . ID=ORF.0.580_0.42130451371.mRNA;Parent=ORF.0.580_0.42130451371
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
189 testseq_2018-03-08 getOrfsOrCds CDS 6095 6205 . - 0 ID=ORF.0.580_0.42130451371.CDS;Parent=ORF.0.580_0.42130451371.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
190 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 6218 6220 . - . ID=ORF.0.580_0.42130451371.rbs-0;Parent=ORF.0.580_0.42130451371
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
191 testseq_2018-03-08 cpt.fixModel gene 6166 6282 . - . ID=ORF.0.429_0.211525337226
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
192 testseq_2018-03-08 cpt.fixModel mRNA 6166 6282 . - . ID=ORF.0.429_0.211525337226.mRNA;Parent=ORF.0.429_0.211525337226
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
193 testseq_2018-03-08 getOrfsOrCds CDS 6166 6282 . - 0 ID=ORF.0.429_0.211525337226.CDS;Parent=ORF.0.429_0.211525337226.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
194 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 6288 6290 . - . ID=ORF.0.429_0.211525337226.rbs-0;Parent=ORF.0.429_0.211525337226
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
195 testseq_2018-03-08 cpt.fixModel gene 6206 6973 . + . ID=ORF.0.202_0.502577350308
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
196 testseq_2018-03-08 cpt.fixModel mRNA 6206 6973 . + . ID=ORF.0.202_0.502577350308.mRNA;Parent=ORF.0.202_0.502577350308
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
197 testseq_2018-03-08 getOrfsOrCds CDS 6206 6973 . + 0 ID=ORF.0.202_0.502577350308.CDS;Parent=ORF.0.202_0.502577350308.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
198 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 6196 6198 . + . ID=ORF.0.202_0.502577350308.rbs-0;Parent=ORF.0.202_0.502577350308
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
199 testseq_2018-03-08 cpt.fixModel gene 6545 6973 . + . ID=ORF.0.217_0.854168148494
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
200 testseq_2018-03-08 cpt.fixModel mRNA 6545 6973 . + . ID=ORF.0.217_0.854168148494.mRNA;Parent=ORF.0.217_0.854168148494
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
201 testseq_2018-03-08 getOrfsOrCds CDS 6545 6973 . + 0 ID=ORF.0.217_0.854168148494.CDS;Parent=ORF.0.217_0.854168148494.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
202 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 6530 6532 . + . ID=ORF.0.217_0.854168148494.rbs-0;Parent=ORF.0.217_0.854168148494
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
203 testseq_2018-03-08 cpt.fixModel gene 6704 6973 . + . ID=ORF.0.224_0.295192659405
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
204 testseq_2018-03-08 cpt.fixModel mRNA 6704 6973 . + . ID=ORF.0.224_0.295192659405.mRNA;Parent=ORF.0.224_0.295192659405
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
205 testseq_2018-03-08 getOrfsOrCds CDS 6704 6973 . + 0 ID=ORF.0.224_0.295192659405.CDS;Parent=ORF.0.224_0.295192659405.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
206 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 6692 6695 . + . ID=ORF.0.224_0.295192659405.rbs-0;Parent=ORF.0.224_0.295192659405
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
207 testseq_2018-03-08 cpt.fixModel gene 6978 7094 . + . ID=ORF.0.355_0.773691408662
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
208 testseq_2018-03-08 cpt.fixModel mRNA 6978 7094 . + . ID=ORF.0.355_0.773691408662.mRNA;Parent=ORF.0.355_0.773691408662
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
209 testseq_2018-03-08 getOrfsOrCds CDS 6978 7094 . + 0 ID=ORF.0.355_0.773691408662.CDS;Parent=ORF.0.355_0.773691408662.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
210 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 6967 6971 . + . ID=ORF.0.355_0.773691408662.rbs-0;Parent=ORF.0.355_0.773691408662
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
211 testseq_2018-03-08 cpt.fixModel gene 7016 7156 . - . ID=ORF.0.571_0.245647554641
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
212 testseq_2018-03-08 cpt.fixModel mRNA 7016 7156 . - . ID=ORF.0.571_0.245647554641.mRNA;Parent=ORF.0.571_0.245647554641
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
213 testseq_2018-03-08 getOrfsOrCds CDS 7016 7156 . - 0 ID=ORF.0.571_0.245647554641.CDS;Parent=ORF.0.571_0.245647554641.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
214 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 7163 7166 . - . ID=ORF.0.571_0.245647554641.rbs-0;Parent=ORF.0.571_0.245647554641
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
215 testseq_2018-03-08 cpt.fixModel gene 7056 7244 . - . ID=ORF.0.492_0.914947831416
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
216 testseq_2018-03-08 cpt.fixModel mRNA 7056 7244 . - . ID=ORF.0.492_0.914947831416.mRNA;Parent=ORF.0.492_0.914947831416
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
217 testseq_2018-03-08 getOrfsOrCds CDS 7056 7244 . - 0 ID=ORF.0.492_0.914947831416.CDS;Parent=ORF.0.492_0.914947831416.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
218 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 7250 7253 . - . ID=ORF.0.492_0.914947831416.rbs-0;Parent=ORF.0.492_0.914947831416
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
219 testseq_2018-03-08 cpt.fixModel gene 7056 7229 . - . ID=ORF.0.494_0.190486747638
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
220 testseq_2018-03-08 cpt.fixModel mRNA 7056 7229 . - . ID=ORF.0.494_0.190486747638.mRNA;Parent=ORF.0.494_0.190486747638
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
221 testseq_2018-03-08 getOrfsOrCds CDS 7056 7229 . - 0 ID=ORF.0.494_0.190486747638.CDS;Parent=ORF.0.494_0.190486747638.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
222 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 7235 7237 . - . ID=ORF.0.494_0.190486747638.rbs-0;Parent=ORF.0.494_0.190486747638
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
223 testseq_2018-03-08 cpt.fixModel gene 7072 7395 . + . ID=ORF.0.33_0.821816667683
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
224 testseq_2018-03-08 cpt.fixModel mRNA 7072 7395 . + . ID=ORF.0.33_0.821816667683.mRNA;Parent=ORF.0.33_0.821816667683
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
225 testseq_2018-03-08 getOrfsOrCds CDS 7072 7395 . + 0 ID=ORF.0.33_0.821816667683.CDS;Parent=ORF.0.33_0.821816667683.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
226 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 7061 7065 . + . ID=ORF.0.33_0.821816667683.rbs-0;Parent=ORF.0.33_0.821816667683
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
227 testseq_2018-03-08 cpt.fixModel gene 7078 7395 . + . ID=ORF.0.34_0.707053863467
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
228 testseq_2018-03-08 cpt.fixModel mRNA 7078 7395 . + . ID=ORF.0.34_0.707053863467.mRNA;Parent=ORF.0.34_0.707053863467
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
229 testseq_2018-03-08 getOrfsOrCds CDS 7078 7395 . + 0 ID=ORF.0.34_0.707053863467.CDS;Parent=ORF.0.34_0.707053863467.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
230 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 7063 7066 . + . ID=ORF.0.34_0.707053863467.rbs-0;Parent=ORF.0.34_0.707053863467
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
231 testseq_2018-03-08 cpt.fixModel gene 7379 7855 . + . ID=ORF.0.231_0.000923123852602
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
232 testseq_2018-03-08 cpt.fixModel mRNA 7379 7855 . + . ID=ORF.0.231_0.000923123852602.mRNA;Parent=ORF.0.231_0.000923123852602
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
233 testseq_2018-03-08 getOrfsOrCds CDS 7379 7855 . + 0 ID=ORF.0.231_0.000923123852602.CDS;Parent=ORF.0.231_0.000923123852602.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
234 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 7369 7372 . + . ID=ORF.0.231_0.000923123852602.rbs-0;Parent=ORF.0.231_0.000923123852602
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
235 testseq_2018-03-08 cpt.fixModel gene 7418 7855 . + . ID=ORF.0.233_0.405974692709
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
236 testseq_2018-03-08 cpt.fixModel mRNA 7418 7855 . + . ID=ORF.0.233_0.405974692709.mRNA;Parent=ORF.0.233_0.405974692709
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
237 testseq_2018-03-08 getOrfsOrCds CDS 7418 7855 . + 0 ID=ORF.0.233_0.405974692709.CDS;Parent=ORF.0.233_0.405974692709.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
238 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 7404 7406 . + . ID=ORF.0.233_0.405974692709.rbs-0;Parent=ORF.0.233_0.405974692709
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
239 testseq_2018-03-08 cpt.fixModel gene 7658 7855 . + . ID=ORF.0.237_0.755472071473
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
240 testseq_2018-03-08 cpt.fixModel mRNA 7658 7855 . + . ID=ORF.0.237_0.755472071473.mRNA;Parent=ORF.0.237_0.755472071473
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
241 testseq_2018-03-08 getOrfsOrCds CDS 7658 7855 . + 0 ID=ORF.0.237_0.755472071473.CDS;Parent=ORF.0.237_0.755472071473.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
242 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 7650 7652 . + . ID=ORF.0.237_0.755472071473.rbs-0;Parent=ORF.0.237_0.755472071473
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
243 testseq_2018-03-08 cpt.fixModel gene 7664 7855 . + . ID=ORF.0.238_0.914046339376
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
244 testseq_2018-03-08 cpt.fixModel mRNA 7664 7855 . + . ID=ORF.0.238_0.914046339376.mRNA;Parent=ORF.0.238_0.914046339376
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
245 testseq_2018-03-08 getOrfsOrCds CDS 7664 7855 . + 0 ID=ORF.0.238_0.914046339376.CDS;Parent=ORF.0.238_0.914046339376.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
246 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 7650 7653 . + . ID=ORF.0.238_0.914046339376.rbs-0;Parent=ORF.0.238_0.914046339376
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
247 testseq_2018-03-08 cpt.fixModel gene 7806 7922 . + . ID=ORF.0.365_0.2945108684
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
248 testseq_2018-03-08 cpt.fixModel mRNA 7806 7922 . + . ID=ORF.0.365_0.2945108684.mRNA;Parent=ORF.0.365_0.2945108684
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
249 testseq_2018-03-08 getOrfsOrCds CDS 7806 7922 . + 0 ID=ORF.0.365_0.2945108684.CDS;Parent=ORF.0.365_0.2945108684.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
250 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 7791 7793 . + . ID=ORF.0.365_0.2945108684.rbs-0;Parent=ORF.0.365_0.2945108684
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
251 testseq_2018-03-08 cpt.fixModel gene 7852 8313 . + . ID=ORF.0.50_0.415010657017
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
252 testseq_2018-03-08 cpt.fixModel mRNA 7852 8313 . + . ID=ORF.0.50_0.415010657017.mRNA;Parent=ORF.0.50_0.415010657017
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
253 testseq_2018-03-08 getOrfsOrCds CDS 7852 8313 . + 0 ID=ORF.0.50_0.415010657017.CDS;Parent=ORF.0.50_0.415010657017.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
254 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 7839 7841 . + . ID=ORF.0.50_0.415010657017.rbs-0;Parent=ORF.0.50_0.415010657017
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
255 testseq_2018-03-08 cpt.fixModel gene 8072 8254 . + . ID=ORF.0.247_0.938715889806
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
256 testseq_2018-03-08 cpt.fixModel mRNA 8072 8254 . + . ID=ORF.0.247_0.938715889806.mRNA;Parent=ORF.0.247_0.938715889806
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
257 testseq_2018-03-08 getOrfsOrCds CDS 8072 8254 . + 0 ID=ORF.0.247_0.938715889806.CDS;Parent=ORF.0.247_0.938715889806.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
258 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 8060 8064 . + . ID=ORF.0.247_0.938715889806.rbs-0;Parent=ORF.0.247_0.938715889806
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
259 testseq_2018-03-08 cpt.fixModel gene 8128 8313 . + . ID=ORF.0.65_0.403948729686
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
260 testseq_2018-03-08 cpt.fixModel mRNA 8128 8313 . + . ID=ORF.0.65_0.403948729686.mRNA;Parent=ORF.0.65_0.403948729686
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
261 testseq_2018-03-08 getOrfsOrCds CDS 8128 8313 . + 0 ID=ORF.0.65_0.403948729686.CDS;Parent=ORF.0.65_0.403948729686.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
262 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 8116 8118 . + . ID=ORF.0.65_0.403948729686.rbs-0;Parent=ORF.0.65_0.403948729686
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
263 testseq_2018-03-08 cpt.fixModel gene 8152 8640 . - . ID=ORF.0.380_0.771335496557
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
264 testseq_2018-03-08 cpt.fixModel mRNA 8152 8640 . - . ID=ORF.0.380_0.771335496557.mRNA;Parent=ORF.0.380_0.771335496557
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
265 testseq_2018-03-08 getOrfsOrCds CDS 8152 8640 . - 0 ID=ORF.0.380_0.771335496557.CDS;Parent=ORF.0.380_0.771335496557.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
266 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 8652 8654 . - . ID=ORF.0.380_0.771335496557.rbs-0;Parent=ORF.0.380_0.771335496557
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
267 testseq_2018-03-08 cpt.fixModel gene 8152 8436 . - . ID=ORF.0.391_0.169373954797
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
268 testseq_2018-03-08 cpt.fixModel mRNA 8152 8436 . - . ID=ORF.0.391_0.169373954797.mRNA;Parent=ORF.0.391_0.169373954797
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
269 testseq_2018-03-08 getOrfsOrCds CDS 8152 8436 . - 0 ID=ORF.0.391_0.169373954797.CDS;Parent=ORF.0.391_0.169373954797.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
270 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 8444 8446 . - . ID=ORF.0.391_0.169373954797.rbs-0;Parent=ORF.0.391_0.169373954797
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
271 testseq_2018-03-08 cpt.fixModel gene 8152 8271 . - . ID=ORF.0.400_0.811321232506
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
272 testseq_2018-03-08 cpt.fixModel mRNA 8152 8271 . - . ID=ORF.0.400_0.811321232506.mRNA;Parent=ORF.0.400_0.811321232506
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
273 testseq_2018-03-08 getOrfsOrCds CDS 8152 8271 . - 0 ID=ORF.0.400_0.811321232506.CDS;Parent=ORF.0.400_0.811321232506.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
274 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 8281 8284 . - . ID=ORF.0.400_0.811321232506.rbs-0;Parent=ORF.0.400_0.811321232506
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
275 testseq_2018-03-08 cpt.fixModel gene 8339 8782 . + . ID=ORF.0.260_0.577298671452
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
276 testseq_2018-03-08 cpt.fixModel mRNA 8339 8782 . + . ID=ORF.0.260_0.577298671452.mRNA;Parent=ORF.0.260_0.577298671452
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
277 testseq_2018-03-08 getOrfsOrCds CDS 8339 8782 . + 0 ID=ORF.0.260_0.577298671452.CDS;Parent=ORF.0.260_0.577298671452.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
278 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 8330 8332 . + . ID=ORF.0.260_0.577298671452.rbs-0;Parent=ORF.0.260_0.577298671452
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
279 testseq_2018-03-08 cpt.fixModel gene 8360 8782 . + . ID=ORF.0.261_0.357298653378
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
280 testseq_2018-03-08 cpt.fixModel mRNA 8360 8782 . + . ID=ORF.0.261_0.357298653378.mRNA;Parent=ORF.0.261_0.357298653378
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
281 testseq_2018-03-08 getOrfsOrCds CDS 8360 8782 . + 0 ID=ORF.0.261_0.357298653378.CDS;Parent=ORF.0.261_0.357298653378.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
282 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 8348 8351 . + . ID=ORF.0.261_0.357298653378.rbs-0;Parent=ORF.0.261_0.357298653378
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
283 testseq_2018-03-08 cpt.fixModel gene 8453 8782 . + . ID=ORF.0.268_0.501011908227
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
284 testseq_2018-03-08 cpt.fixModel mRNA 8453 8782 . + . ID=ORF.0.268_0.501011908227.mRNA;Parent=ORF.0.268_0.501011908227
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
285 testseq_2018-03-08 getOrfsOrCds CDS 8453 8782 . + 0 ID=ORF.0.268_0.501011908227.CDS;Parent=ORF.0.268_0.501011908227.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
286 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 8438 8440 . + . ID=ORF.0.268_0.501011908227.rbs-0;Parent=ORF.0.268_0.501011908227
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
287 testseq_2018-03-08 cpt.fixModel gene 8504 8782 . + . ID=ORF.0.269_0.219984821414
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
288 testseq_2018-03-08 cpt.fixModel mRNA 8504 8782 . + . ID=ORF.0.269_0.219984821414.mRNA;Parent=ORF.0.269_0.219984821414
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
289 testseq_2018-03-08 getOrfsOrCds CDS 8504 8782 . + 0 ID=ORF.0.269_0.219984821414.CDS;Parent=ORF.0.269_0.219984821414.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
290 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 8493 8495 . + . ID=ORF.0.269_0.219984821414.rbs-0;Parent=ORF.0.269_0.219984821414
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
291 testseq_2018-03-08 cpt.fixModel gene 8621 8782 . + . ID=ORF.0.278_0.44001518346
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
292 testseq_2018-03-08 cpt.fixModel mRNA 8621 8782 . + . ID=ORF.0.278_0.44001518346.mRNA;Parent=ORF.0.278_0.44001518346
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
293 testseq_2018-03-08 getOrfsOrCds CDS 8621 8782 . + 0 ID=ORF.0.278_0.44001518346.CDS;Parent=ORF.0.278_0.44001518346.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
294 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 8612 8614 . + . ID=ORF.0.278_0.44001518346.rbs-0;Parent=ORF.0.278_0.44001518346
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
295 testseq_2018-03-08 cpt.fixModel gene 8944 9198 . + . ID=ORF.0.81_0.839099082128
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
296 testseq_2018-03-08 cpt.fixModel mRNA 8944 9198 . + . ID=ORF.0.81_0.839099082128.mRNA;Parent=ORF.0.81_0.839099082128
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
297 testseq_2018-03-08 getOrfsOrCds CDS 8944 9198 . + 0 ID=ORF.0.81_0.839099082128.CDS;Parent=ORF.0.81_0.839099082128.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
298 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 8929 8931 . + . ID=ORF.0.81_0.839099082128.rbs-0;Parent=ORF.0.81_0.839099082128
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
299 testseq_2018-03-08 cpt.fixModel gene 9037 9198 . + . ID=ORF.0.87_0.518549362319
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
300 testseq_2018-03-08 cpt.fixModel mRNA 9037 9198 . + . ID=ORF.0.87_0.518549362319.mRNA;Parent=ORF.0.87_0.518549362319
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
301 testseq_2018-03-08 getOrfsOrCds CDS 9037 9198 . + 0 ID=ORF.0.87_0.518549362319.CDS;Parent=ORF.0.87_0.518549362319.mRNA
adde21b6bdb3 Uploaded
cpt
parents:
diff changeset
302 testseq_2018-03-08 CPT_ShineFind Shine_Dalgarno_sequence 9022 9024 . + . ID=ORF.0.87_0.518549362319.rbs-0;Parent=ORF.0.87_0.518549362319