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annotate lib/CPT/Filetype/fasta.pm @ 1:8691c1c61a8e draft default tip

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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author cpt
date Mon, 05 Jun 2023 02:48:47 +0000
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1 package CPT::Filetype::fasta;
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2 no warnings;
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3 use Moose;
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4 with 'CPT::Filetype';
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5
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6 sub score {
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7 my ($self) = @_;
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8 my @l = @{$self->lines()};
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9
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10 for(my $i = 0; $i < scalar(@l) - 1; $i++){
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11 if(substr($l[$i],0,1) eq '>' && $l[$i+1] =~ /[A-Za-z]/){
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12 return 1;
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13 }
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14 }
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15 return 0;
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16 }
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17
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18 sub name {
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19 return 'fasta';
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20 }
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21
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22 no Moose;
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23 1;
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24
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25 __END__
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27 =pod
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28
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29 =encoding UTF-8
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30
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31 =head1 NAME
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32
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33 CPT::Filetype::fasta
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34
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35 =head1 VERSION
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36
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37 version 1.99.4
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38
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39 =head1 AUTHOR
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40
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41 Eric Rasche <rasche.eric@yandex.ru>
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42
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43 =head1 COPYRIGHT AND LICENSE
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44
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45 This software is Copyright (c) 2014 by Eric Rasche.
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46
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47 This is free software, licensed under:
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48
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49 The GNU General Public License, Version 3, June 2007
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50
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51 =cut