Mercurial > repos > crs4 > blat

annotate test-data/input83.fasta @ 5:34e40c872149 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Correct requirement for blat version 35x1 .
author crs4
date Mon, 24 Feb 2014 06:27:47 -0500
parents c4ad58c4bc7d
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
1 >OR83b
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
2 TTTTTATAATGTGTGCGTGTGTGTGTGTGTGTGTGTCGCATTGATTTCGC
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
3 AATTTATGGGCGATTTGATGGATTGCTTGAATAACTTTATATGCTTATTT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
4 TTGAGTTTTTATTGTTTTACAACTTGCGGTATTTTATGTAGAGATCCTGT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
5 GGACGACCTAATGGAAATCATTTGGTTTTGGCTGAAATGCGGCCATAAAG
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
6 GTGTGAATCAAAATAATGTTGCCTATACTTCGGGTATATCATTTCATATG
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
7 GAAAGCGCTTAATAATAATTATATAAATATATAATTTCTAGTTAATGTGA
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
8 CTTTATTAACCCATTAGTGCGTTTTAATCATTTAATTTGGCATCAGAATC
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
9 GATCACAGTCACGAACACAAAAGCGTAATGGTAAAAATAAAGGCTCATTT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
10 GTTTAAGTTGTAAATTAAATAAAGCAAGTGTCACTTTCCATTTAAATGTT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
11 GCCTAATAATTAATGACAAAAGGCTGCAGGGCTCACGATGTCCGCGGTTA
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
12 GCTAATTGATCCAAACGCATCCGCGTAATTAAACTTTCAGCCACAAGCCC
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
13 ATAAAATAAATCAAAAAGCGAAGGACCGAAAGGGGCAACATTTAGGGGGG
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
14 GGGGGCTTGTTTCGCATGGCTGAGTTCAGGACGATTAAACGTTAAATCAA
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
15 TATTGTTAAATCCCCGCTCGCATCCCCGCAATCCACACAGGCAAGTGTTC
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
16 ACGTATTAATTGATGTTCGTGAGTGTCCTGCATTTAAATAATCCATGATT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
17 TGGGACATCTGTGTCTGAGTTCCCATTCATATATGTATGCATATGTGTAT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
18 ATGAGTGGTGGAAACTAGCTGCAGATATAGCTACAGACACAGATACATTT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
19 ACATTCCGGCACATAGTTTTAAGTGTGATTCAGTTATTCACAATAGTCGC
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
20 CGCTTTTTGTTCTTGCCACGTTTTAATATTGTCACAACTAGTTTCGAATA
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
21 ACTAAATTGGATGTTTTCGATTAGCATTCAATACACTGCTCAGCAATTTC
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
22 GTTTGCGTTGCAATTTGAGTACTAGATTTTGAATTAGACAATTGTTTTAT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
23 TAATTGCCTACATGTATATTACCTAACTGATTTCGAAGGCCACTTGTACG
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
24 ACCTTGAGATAGAGTATTAATTATTTAAATTCTACTGTATTATAATTGCA
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
25 AAGAATTGTAAGTATTCATAATATATAATGGCAACCCAATTTAAGACTTC
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
26 TTTTGAAGGCCCCCGCCTACCGAAATTCAGTGCCTATGAGAACTGAGAAC
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
27 GAAAAAAATTGAGCAAGGACCAAATATCCATCAGGCTGAACACACACATT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
28 TTCATGCAAATAGGCAATGTGTTATTTTTTTGGGTCAGCGATTCACGGAG
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
29 GGATCCCCACCAAATGGGTTGGCTGAGGAATGGCCTATCCCCATATCTCA
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
30 GCGGCACTTGGGGCAGGCCAACAAATACAAGCAGGCATAATAAAATAATC
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
31 GATGCTTTTAAAATTTGCATAAGTTTGGATACCGCAGATGCCGCGCAAGG
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
32 ATGAGCCCATCTCCAGTCCCAGTGCCATTCCGCCAGTGCGCATACGCCGC
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
33 GTGGAGGGCACAGGACTGGGCCATGGCCCATGGCCCAAAAGCGGAGTCCT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
34 AGACCCGGAGACGACAGCAGTGGTGGACAAGTTCGTGGGCGTTCGATTTA
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
35 ATTGTGGGAATTCTGCGTCTGCCACGCACCCATCACATCGATGGACGTGG
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
36 CTGAAGAGCTGAATTTTTAAGCGCTCCAAGGCGGCCCGATACCCATATTG
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
37 TATATTTTCATTACCATGTGTGGGTCGGAGTGAAAGTCGCGGGCTAGGAT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
38 TTAATGTGGCCTTGTTGCAGCCGTGGGAACTCGTCCTCAAAGTACACGTC
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
39 CTTATGTACAGCGGAGCAAGTACCTAGCCGACAGAAGGAGCAGGCACTTG
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
40 TCGACAGAGCTTTTTAACCTTCCGGATTTCACATTTCATTACCGTCGACA
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
41 TCGCGGTGCTGGCAGGTCAACTGTGTCCTGGTTCCGGAAAGCCTCATATC
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
42 TCGTATCTTAAAGTATCCCGGTTAAGCCTTAAAGAGTGAAATGATTGCCT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
43 AGATGATTGCTGCATTACTGGCACTCAATTAACCCAAGTGTACCAGACAA
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
44 CAATTACATTTGTATTTTTAAAGTTCAATAGCAAGGTAATAGCACTGGGT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
45 CTTTCAATATTACAATATTACCAATTAGAGAACCATATATCGTACACAAT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
46 TGTTCCACATTCCGAATTTAATAACTCACGATCGATAGCCAAATTAATAT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
47 TAATTTGAGAGGACATGAGTCCACCTGAATATTCAATATGCATTATACAT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
48 TATCCCGCTATGAATAAAACATTCCAAATCGATTCATTTCGGGCAGGAAA
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
49 ATTCCTTTTCTACTCGGCAAGCAAACCAAGGACTAATCACAAATACGGAA
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
50 TATTGAACAGATTACGTTCATAATAGCTGATTGTGTTGGCGAAACCTATT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
51 AATTTTGTCGTGCAATTTCCGCCGCTCAACAGGATGACAACCTCGATGCA
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
52 GCCGAGCAAGTACACGGGCCTGGTCGCCGACCTGATGCCCAACATCCGGG
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
53 CGATGAAGTACTCCGGCCTGTTCATGCACAACTTCACGGGCGGCAGTGCC
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
54 TTCATGAAGAAGGTGTACTCCTCCGTGCACCTGGTGTTCCTCCTCATGCA
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
55 GTTCACCTTCATCCTGGTCAACATGGCCCTGAACGCCGAGGAGGTCAACG
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
56 AGCTGTCGGGCAACACGATCACGACCCTCTTCTTCACCCACTGCATCACG
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
57 AAGTTTATCTACCTGGCTGTTAACCAGAAGAATTTCTACAGGTGAGCCTC
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
58 TGCTCACCGCACCGAGCTTACGAACACTTGGGGAATTTAAAATTTTATGT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
59 TTTTCCGGCAGAACATTGAATATATGGAACCAGGTGAACACGCATCCCTT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
60 GTTCGCCGAGTCGGATGCTCGTTACCATTCGATCGCACTGGCGAAGATGA
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
61 GGAAGCTGTTCTTTCTGGTGATGCTGACCACAGTCGCCTCGGCCACCGCC
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
62 TGGACCACGATCACCTTCTTTGGCGACAGCGTAAAAATGGTGGTGGACCA
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
63 TGAGACGAACTCCAGCATCCCGGTGGAGATACCCCGGCTGCCGATTAAGT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
64 CCTTCTACCCGTGGAACGCCAGCCACGGCATGTTCTACATGATCAGCTTT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
65 GCCTTTCAGATCTACTACGTGCTCTTCTCGATGATCCACTCCAATCTATG
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
66 CGACGTGATGTTCTGCTCTTGGCTGATATTCGCCTGCGAGCAGCTGCAGC
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
67 ACTTGAAGGGCATCATGAAGCCGCTGATGGAGCTGTCCGCCTCGCTGGAC
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
68 ACCTACAGGCCCAACTCGGCGGCCCTCTTCAGGTCCCTGTCGGCCAACTC
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
69 CAAGTCGGAGCTAATTCATAATGAAGGTGATTTGTTGAGTCTGAACCTAA
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
70 ACTTTTAGGCGGTTATTCAGTGAGCACTTCACTGAATAGGAAAATGCCAT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
71 GACGAGCTGTTTTTCCATTGCAGAAAAGGATCCCGGCACCGACATGGACA
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
72 TGTCGGGCATCTACAGCTCGAAAGCGGATTGGGGCGCTCAGTTTCGAGCA
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
73 CCCTCGACACTGCAGTCCTTTGGCGGGAACGGGGGCGGAGGCAACGGGTT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
74 GGTGAACGGCGCTAATCCCAACGGGCTGACCAAAAAGCAGGAGATGATGG
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
75 TGCGCAGTGCCATCAAGTACTGGGTCGAGCGGCACAAGCACGTGGTGCGG
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
76 TGAGTTCAAATCCTGGCCAAATTGGACCAGCCATTTCAAGGGGGCTTTGG
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
77 CCAGTGATGATTGGATTTTTGGCGATTTAAATGGCAGAGCAGTCCACTCA
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
78 TATTTCATGGACTTGGATTTTTGCCTTTAACAGAGCACCGAACATAATAA
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
79 ACACACACACTTTCCCCTCAGTTTTGTAAAACTTCAATAGGCGCCATCGG
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
80 AACATGTGTTCTCATTTATTAGGAGCTCAACAGATCCCTGCAGCTTGTTT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
81 GACTTACTTGATTACTTCCTCAATTGCAATCATTGTTGGGGGCCCTAGAG
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
82 GAATGTCCTTGTTTGTCCTGTCCGACAGTTGGCGTGTGCAGTTGTTGATA
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
83 CCAATATTGACTTGATTCCTGCCTGCAATCCCTCATCCTTTCCCCCGTTG
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
84 CCTTTTCCCCACAGACTGGTGGCTGCCATCGGCGATACTTACGGAGCCGC
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
85 CCTCCTCCTCCACATGCTGACCTCGACCATCAAGCTGACCCTGCTGGCAT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
86 ACCAGGCCACCAAAATCAACGGAGTGAATGTCTACGCCTTCACAGTCGTC
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
87 GGATACCTAGGATACGCGCTGGCCCAGGTGTTCCACTTTTGCATCTTTGG
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
88 CAATCGTCTGATTGAAGAGGTGAGTTTGTGCAGGGTTGCAAGATAAATTT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
89 ATAAGTAAATCAGACATCAGTCTCAACTGATTAATAATCGAGAACATCCT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
90 TATTTGAGTTATAGGGATATTTATAAAAAATTTTGAGACTTCATTAAAAC
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
91 TAAATGAATTGTAAGTTGAGAGTCAACAGATTGGTCCGTTCACTACAAGC
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
92 TAACCAGTGTGTTTTTTCCATGTGGTAGAAATAAAAGGGTGTTTTTGCGT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
93 ATGAGATAAAATTGAACCAATGTTTTCAAGTTTATAGATTGGGAAACATA
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
94 CATAGTTCTAAACGTTGTTATAGTTATAGTTTGTGTAGTTAGTTATCTAG
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
95 AGCATCCTTAATACGACTTTCATTTCGCAGAGTTCATCCGTCATGGAGGC
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
96 CGCCTACTCGTGCCACTGGTACGATGGCTCCGAGGAGGCCAAGACCTTCG
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
97 TCCAGATCGTGTGCCAGCAGTGCCAGAAGGCGATGAGCATATCGGGAGCG
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
98 AAATTCTTCACCGTCTCCCTGGATTTGTTTGCTTCGGTTTGTTGCATTTG
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
99 ATTTATTGATCTATTGATGGAGTTAAAACTGAATCGGATATTCCCGATTC
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
100 GCAGGTTCTGGGTGCCGTCGTCACCTACTTTATGGTGCTGGTGCAGCTCA
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
101 AGTAAGTTGCTGCGAAGCTGATGGATTTTTGTACCAGAAAAGCGAATGCC
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
102 AAGAAGCCACCTACCGCCCCTTGCCCCCTCCGCACTGTGCAACCAGCAAT
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
103 ATCACAGAGCAATTATAACGCAAATTATATATTTTATACCTGCGACGAGC
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
104 GAGCCTCGTGGGGCATAATGGAGACATTCTGGGGCACATAGAAGCCTGCA
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
105 AATACTTATCGATTTTGTACACGCGTAGAGCTTTTAATGTAAACCCAAGA
c4ad58c4bc7d Add version_command element.
crs4
parents:
diff changeset
106 TGCAAACTAAATAAATGTGTAGTG