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annotate test-data/input83.fasta @ 1:c4ad58c4bc7d draft

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Add version_command element. Add test case from Joachim Jacob's blat wrapper: http://testtoolshed.g2.bx.psu.edu/view/joachim-jacob/blat . Add readme section to tool_dependencies.xml .
author crs4
date Mon, 28 Oct 2013 12:40:29 -0400
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1
c4ad58c4bc7d Add version_command element.
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1 >OR83b
c4ad58c4bc7d Add version_command element.
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2 TTTTTATAATGTGTGCGTGTGTGTGTGTGTGTGTGTCGCATTGATTTCGC
c4ad58c4bc7d Add version_command element.
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3 AATTTATGGGCGATTTGATGGATTGCTTGAATAACTTTATATGCTTATTT
c4ad58c4bc7d Add version_command element.
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4 TTGAGTTTTTATTGTTTTACAACTTGCGGTATTTTATGTAGAGATCCTGT
c4ad58c4bc7d Add version_command element.
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5 GGACGACCTAATGGAAATCATTTGGTTTTGGCTGAAATGCGGCCATAAAG
c4ad58c4bc7d Add version_command element.
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6 GTGTGAATCAAAATAATGTTGCCTATACTTCGGGTATATCATTTCATATG
c4ad58c4bc7d Add version_command element.
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7 GAAAGCGCTTAATAATAATTATATAAATATATAATTTCTAGTTAATGTGA
c4ad58c4bc7d Add version_command element.
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8 CTTTATTAACCCATTAGTGCGTTTTAATCATTTAATTTGGCATCAGAATC
c4ad58c4bc7d Add version_command element.
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9 GATCACAGTCACGAACACAAAAGCGTAATGGTAAAAATAAAGGCTCATTT
c4ad58c4bc7d Add version_command element.
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10 GTTTAAGTTGTAAATTAAATAAAGCAAGTGTCACTTTCCATTTAAATGTT
c4ad58c4bc7d Add version_command element.
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11 GCCTAATAATTAATGACAAAAGGCTGCAGGGCTCACGATGTCCGCGGTTA
c4ad58c4bc7d Add version_command element.
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12 GCTAATTGATCCAAACGCATCCGCGTAATTAAACTTTCAGCCACAAGCCC
c4ad58c4bc7d Add version_command element.
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13 ATAAAATAAATCAAAAAGCGAAGGACCGAAAGGGGCAACATTTAGGGGGG
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14 GGGGGCTTGTTTCGCATGGCTGAGTTCAGGACGATTAAACGTTAAATCAA
c4ad58c4bc7d Add version_command element.
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15 TATTGTTAAATCCCCGCTCGCATCCCCGCAATCCACACAGGCAAGTGTTC
c4ad58c4bc7d Add version_command element.
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16 ACGTATTAATTGATGTTCGTGAGTGTCCTGCATTTAAATAATCCATGATT
c4ad58c4bc7d Add version_command element.
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17 TGGGACATCTGTGTCTGAGTTCCCATTCATATATGTATGCATATGTGTAT
c4ad58c4bc7d Add version_command element.
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18 ATGAGTGGTGGAAACTAGCTGCAGATATAGCTACAGACACAGATACATTT
c4ad58c4bc7d Add version_command element.
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19 ACATTCCGGCACATAGTTTTAAGTGTGATTCAGTTATTCACAATAGTCGC
c4ad58c4bc7d Add version_command element.
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20 CGCTTTTTGTTCTTGCCACGTTTTAATATTGTCACAACTAGTTTCGAATA
c4ad58c4bc7d Add version_command element.
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21 ACTAAATTGGATGTTTTCGATTAGCATTCAATACACTGCTCAGCAATTTC
c4ad58c4bc7d Add version_command element.
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22 GTTTGCGTTGCAATTTGAGTACTAGATTTTGAATTAGACAATTGTTTTAT
c4ad58c4bc7d Add version_command element.
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23 TAATTGCCTACATGTATATTACCTAACTGATTTCGAAGGCCACTTGTACG
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24 ACCTTGAGATAGAGTATTAATTATTTAAATTCTACTGTATTATAATTGCA
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25 AAGAATTGTAAGTATTCATAATATATAATGGCAACCCAATTTAAGACTTC
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26 TTTTGAAGGCCCCCGCCTACCGAAATTCAGTGCCTATGAGAACTGAGAAC
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27 GAAAAAAATTGAGCAAGGACCAAATATCCATCAGGCTGAACACACACATT
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28 TTCATGCAAATAGGCAATGTGTTATTTTTTTGGGTCAGCGATTCACGGAG
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29 GGATCCCCACCAAATGGGTTGGCTGAGGAATGGCCTATCCCCATATCTCA
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30 GCGGCACTTGGGGCAGGCCAACAAATACAAGCAGGCATAATAAAATAATC
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31 GATGCTTTTAAAATTTGCATAAGTTTGGATACCGCAGATGCCGCGCAAGG
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32 ATGAGCCCATCTCCAGTCCCAGTGCCATTCCGCCAGTGCGCATACGCCGC
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33 GTGGAGGGCACAGGACTGGGCCATGGCCCATGGCCCAAAAGCGGAGTCCT
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34 AGACCCGGAGACGACAGCAGTGGTGGACAAGTTCGTGGGCGTTCGATTTA
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35 ATTGTGGGAATTCTGCGTCTGCCACGCACCCATCACATCGATGGACGTGG
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36 CTGAAGAGCTGAATTTTTAAGCGCTCCAAGGCGGCCCGATACCCATATTG
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37 TATATTTTCATTACCATGTGTGGGTCGGAGTGAAAGTCGCGGGCTAGGAT
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38 TTAATGTGGCCTTGTTGCAGCCGTGGGAACTCGTCCTCAAAGTACACGTC
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39 CTTATGTACAGCGGAGCAAGTACCTAGCCGACAGAAGGAGCAGGCACTTG
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40 TCGACAGAGCTTTTTAACCTTCCGGATTTCACATTTCATTACCGTCGACA
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41 TCGCGGTGCTGGCAGGTCAACTGTGTCCTGGTTCCGGAAAGCCTCATATC
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42 TCGTATCTTAAAGTATCCCGGTTAAGCCTTAAAGAGTGAAATGATTGCCT
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43 AGATGATTGCTGCATTACTGGCACTCAATTAACCCAAGTGTACCAGACAA
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44 CAATTACATTTGTATTTTTAAAGTTCAATAGCAAGGTAATAGCACTGGGT
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45 CTTTCAATATTACAATATTACCAATTAGAGAACCATATATCGTACACAAT
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46 TGTTCCACATTCCGAATTTAATAACTCACGATCGATAGCCAAATTAATAT
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47 TAATTTGAGAGGACATGAGTCCACCTGAATATTCAATATGCATTATACAT
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48 TATCCCGCTATGAATAAAACATTCCAAATCGATTCATTTCGGGCAGGAAA
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49 ATTCCTTTTCTACTCGGCAAGCAAACCAAGGACTAATCACAAATACGGAA
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50 TATTGAACAGATTACGTTCATAATAGCTGATTGTGTTGGCGAAACCTATT
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51 AATTTTGTCGTGCAATTTCCGCCGCTCAACAGGATGACAACCTCGATGCA
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52 GCCGAGCAAGTACACGGGCCTGGTCGCCGACCTGATGCCCAACATCCGGG
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53 CGATGAAGTACTCCGGCCTGTTCATGCACAACTTCACGGGCGGCAGTGCC
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54 TTCATGAAGAAGGTGTACTCCTCCGTGCACCTGGTGTTCCTCCTCATGCA
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55 GTTCACCTTCATCCTGGTCAACATGGCCCTGAACGCCGAGGAGGTCAACG
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56 AGCTGTCGGGCAACACGATCACGACCCTCTTCTTCACCCACTGCATCACG
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57 AAGTTTATCTACCTGGCTGTTAACCAGAAGAATTTCTACAGGTGAGCCTC
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58 TGCTCACCGCACCGAGCTTACGAACACTTGGGGAATTTAAAATTTTATGT
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59 TTTTCCGGCAGAACATTGAATATATGGAACCAGGTGAACACGCATCCCTT
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60 GTTCGCCGAGTCGGATGCTCGTTACCATTCGATCGCACTGGCGAAGATGA
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61 GGAAGCTGTTCTTTCTGGTGATGCTGACCACAGTCGCCTCGGCCACCGCC
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62 TGGACCACGATCACCTTCTTTGGCGACAGCGTAAAAATGGTGGTGGACCA
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63 TGAGACGAACTCCAGCATCCCGGTGGAGATACCCCGGCTGCCGATTAAGT
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64 CCTTCTACCCGTGGAACGCCAGCCACGGCATGTTCTACATGATCAGCTTT
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65 GCCTTTCAGATCTACTACGTGCTCTTCTCGATGATCCACTCCAATCTATG
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66 CGACGTGATGTTCTGCTCTTGGCTGATATTCGCCTGCGAGCAGCTGCAGC
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67 ACTTGAAGGGCATCATGAAGCCGCTGATGGAGCTGTCCGCCTCGCTGGAC
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68 ACCTACAGGCCCAACTCGGCGGCCCTCTTCAGGTCCCTGTCGGCCAACTC
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69 CAAGTCGGAGCTAATTCATAATGAAGGTGATTTGTTGAGTCTGAACCTAA
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70 ACTTTTAGGCGGTTATTCAGTGAGCACTTCACTGAATAGGAAAATGCCAT
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71 GACGAGCTGTTTTTCCATTGCAGAAAAGGATCCCGGCACCGACATGGACA
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72 TGTCGGGCATCTACAGCTCGAAAGCGGATTGGGGCGCTCAGTTTCGAGCA
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73 CCCTCGACACTGCAGTCCTTTGGCGGGAACGGGGGCGGAGGCAACGGGTT
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74 GGTGAACGGCGCTAATCCCAACGGGCTGACCAAAAAGCAGGAGATGATGG
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75 TGCGCAGTGCCATCAAGTACTGGGTCGAGCGGCACAAGCACGTGGTGCGG
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76 TGAGTTCAAATCCTGGCCAAATTGGACCAGCCATTTCAAGGGGGCTTTGG
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77 CCAGTGATGATTGGATTTTTGGCGATTTAAATGGCAGAGCAGTCCACTCA
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78 TATTTCATGGACTTGGATTTTTGCCTTTAACAGAGCACCGAACATAATAA
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79 ACACACACACTTTCCCCTCAGTTTTGTAAAACTTCAATAGGCGCCATCGG
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80 AACATGTGTTCTCATTTATTAGGAGCTCAACAGATCCCTGCAGCTTGTTT
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81 GACTTACTTGATTACTTCCTCAATTGCAATCATTGTTGGGGGCCCTAGAG
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82 GAATGTCCTTGTTTGTCCTGTCCGACAGTTGGCGTGTGCAGTTGTTGATA
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83 CCAATATTGACTTGATTCCTGCCTGCAATCCCTCATCCTTTCCCCCGTTG
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84 CCTTTTCCCCACAGACTGGTGGCTGCCATCGGCGATACTTACGGAGCCGC
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85 CCTCCTCCTCCACATGCTGACCTCGACCATCAAGCTGACCCTGCTGGCAT
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86 ACCAGGCCACCAAAATCAACGGAGTGAATGTCTACGCCTTCACAGTCGTC
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87 GGATACCTAGGATACGCGCTGGCCCAGGTGTTCCACTTTTGCATCTTTGG
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88 CAATCGTCTGATTGAAGAGGTGAGTTTGTGCAGGGTTGCAAGATAAATTT
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89 ATAAGTAAATCAGACATCAGTCTCAACTGATTAATAATCGAGAACATCCT
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90 TATTTGAGTTATAGGGATATTTATAAAAAATTTTGAGACTTCATTAAAAC
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91 TAAATGAATTGTAAGTTGAGAGTCAACAGATTGGTCCGTTCACTACAAGC
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92 TAACCAGTGTGTTTTTTCCATGTGGTAGAAATAAAAGGGTGTTTTTGCGT
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93 ATGAGATAAAATTGAACCAATGTTTTCAAGTTTATAGATTGGGAAACATA
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94 CATAGTTCTAAACGTTGTTATAGTTATAGTTTGTGTAGTTAGTTATCTAG
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95 AGCATCCTTAATACGACTTTCATTTCGCAGAGTTCATCCGTCATGGAGGC
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96 CGCCTACTCGTGCCACTGGTACGATGGCTCCGAGGAGGCCAAGACCTTCG
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97 TCCAGATCGTGTGCCAGCAGTGCCAGAAGGCGATGAGCATATCGGGAGCG
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98 AAATTCTTCACCGTCTCCCTGGATTTGTTTGCTTCGGTTTGTTGCATTTG
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99 ATTTATTGATCTATTGATGGAGTTAAAACTGAATCGGATATTCCCGATTC
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100 GCAGGTTCTGGGTGCCGTCGTCACCTACTTTATGGTGCTGGTGCAGCTCA
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101 AGTAAGTTGCTGCGAAGCTGATGGATTTTTGTACCAGAAAAGCGAATGCC
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102 AAGAAGCCACCTACCGCCCCTTGCCCCCTCCGCACTGTGCAACCAGCAAT
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103 ATCACAGAGCAATTATAACGCAAATTATATATTTTATACCTGCGACGAGC
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104 GAGCCTCGTGGGGCATAATGGAGACATTCTGGGGCACATAGAAGCCTGCA
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105 AATACTTATCGATTTTGTACACGCGTAGAGCTTTTAATGTAAACCCAAGA
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106 TGCAAACTAAATAAATGTGTAGTG