Mercurial > repos > crs4 > blat
comparison test-data/input83.fasta @ 1:c4ad58c4bc7d draft
Add version_command element.
Add test case from Joachim Jacob's blat wrapper: http://testtoolshed.g2.bx.psu.edu/view/joachim-jacob/blat .
Add readme section to tool_dependencies.xml .
author | crs4 |
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date | Mon, 28 Oct 2013 12:40:29 -0400 |
parents | |
children |
comparison
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0:0a71a7d35d09 | 1:c4ad58c4bc7d |
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1 >OR83b | |
2 TTTTTATAATGTGTGCGTGTGTGTGTGTGTGTGTGTCGCATTGATTTCGC | |
3 AATTTATGGGCGATTTGATGGATTGCTTGAATAACTTTATATGCTTATTT | |
4 TTGAGTTTTTATTGTTTTACAACTTGCGGTATTTTATGTAGAGATCCTGT | |
5 GGACGACCTAATGGAAATCATTTGGTTTTGGCTGAAATGCGGCCATAAAG | |
6 GTGTGAATCAAAATAATGTTGCCTATACTTCGGGTATATCATTTCATATG | |
7 GAAAGCGCTTAATAATAATTATATAAATATATAATTTCTAGTTAATGTGA | |
8 CTTTATTAACCCATTAGTGCGTTTTAATCATTTAATTTGGCATCAGAATC | |
9 GATCACAGTCACGAACACAAAAGCGTAATGGTAAAAATAAAGGCTCATTT | |
10 GTTTAAGTTGTAAATTAAATAAAGCAAGTGTCACTTTCCATTTAAATGTT | |
11 GCCTAATAATTAATGACAAAAGGCTGCAGGGCTCACGATGTCCGCGGTTA | |
12 GCTAATTGATCCAAACGCATCCGCGTAATTAAACTTTCAGCCACAAGCCC | |
13 ATAAAATAAATCAAAAAGCGAAGGACCGAAAGGGGCAACATTTAGGGGGG | |
14 GGGGGCTTGTTTCGCATGGCTGAGTTCAGGACGATTAAACGTTAAATCAA | |
15 TATTGTTAAATCCCCGCTCGCATCCCCGCAATCCACACAGGCAAGTGTTC | |
16 ACGTATTAATTGATGTTCGTGAGTGTCCTGCATTTAAATAATCCATGATT | |
17 TGGGACATCTGTGTCTGAGTTCCCATTCATATATGTATGCATATGTGTAT | |
18 ATGAGTGGTGGAAACTAGCTGCAGATATAGCTACAGACACAGATACATTT | |
19 ACATTCCGGCACATAGTTTTAAGTGTGATTCAGTTATTCACAATAGTCGC | |
20 CGCTTTTTGTTCTTGCCACGTTTTAATATTGTCACAACTAGTTTCGAATA | |
21 ACTAAATTGGATGTTTTCGATTAGCATTCAATACACTGCTCAGCAATTTC | |
22 GTTTGCGTTGCAATTTGAGTACTAGATTTTGAATTAGACAATTGTTTTAT | |
23 TAATTGCCTACATGTATATTACCTAACTGATTTCGAAGGCCACTTGTACG | |
24 ACCTTGAGATAGAGTATTAATTATTTAAATTCTACTGTATTATAATTGCA | |
25 AAGAATTGTAAGTATTCATAATATATAATGGCAACCCAATTTAAGACTTC | |
26 TTTTGAAGGCCCCCGCCTACCGAAATTCAGTGCCTATGAGAACTGAGAAC | |
27 GAAAAAAATTGAGCAAGGACCAAATATCCATCAGGCTGAACACACACATT | |
28 TTCATGCAAATAGGCAATGTGTTATTTTTTTGGGTCAGCGATTCACGGAG | |
29 GGATCCCCACCAAATGGGTTGGCTGAGGAATGGCCTATCCCCATATCTCA | |
30 GCGGCACTTGGGGCAGGCCAACAAATACAAGCAGGCATAATAAAATAATC | |
31 GATGCTTTTAAAATTTGCATAAGTTTGGATACCGCAGATGCCGCGCAAGG | |
32 ATGAGCCCATCTCCAGTCCCAGTGCCATTCCGCCAGTGCGCATACGCCGC | |
33 GTGGAGGGCACAGGACTGGGCCATGGCCCATGGCCCAAAAGCGGAGTCCT | |
34 AGACCCGGAGACGACAGCAGTGGTGGACAAGTTCGTGGGCGTTCGATTTA | |
35 ATTGTGGGAATTCTGCGTCTGCCACGCACCCATCACATCGATGGACGTGG | |
36 CTGAAGAGCTGAATTTTTAAGCGCTCCAAGGCGGCCCGATACCCATATTG | |
37 TATATTTTCATTACCATGTGTGGGTCGGAGTGAAAGTCGCGGGCTAGGAT | |
38 TTAATGTGGCCTTGTTGCAGCCGTGGGAACTCGTCCTCAAAGTACACGTC | |
39 CTTATGTACAGCGGAGCAAGTACCTAGCCGACAGAAGGAGCAGGCACTTG | |
40 TCGACAGAGCTTTTTAACCTTCCGGATTTCACATTTCATTACCGTCGACA | |
41 TCGCGGTGCTGGCAGGTCAACTGTGTCCTGGTTCCGGAAAGCCTCATATC | |
42 TCGTATCTTAAAGTATCCCGGTTAAGCCTTAAAGAGTGAAATGATTGCCT | |
43 AGATGATTGCTGCATTACTGGCACTCAATTAACCCAAGTGTACCAGACAA | |
44 CAATTACATTTGTATTTTTAAAGTTCAATAGCAAGGTAATAGCACTGGGT | |
45 CTTTCAATATTACAATATTACCAATTAGAGAACCATATATCGTACACAAT | |
46 TGTTCCACATTCCGAATTTAATAACTCACGATCGATAGCCAAATTAATAT | |
47 TAATTTGAGAGGACATGAGTCCACCTGAATATTCAATATGCATTATACAT | |
48 TATCCCGCTATGAATAAAACATTCCAAATCGATTCATTTCGGGCAGGAAA | |
49 ATTCCTTTTCTACTCGGCAAGCAAACCAAGGACTAATCACAAATACGGAA | |
50 TATTGAACAGATTACGTTCATAATAGCTGATTGTGTTGGCGAAACCTATT | |
51 AATTTTGTCGTGCAATTTCCGCCGCTCAACAGGATGACAACCTCGATGCA | |
52 GCCGAGCAAGTACACGGGCCTGGTCGCCGACCTGATGCCCAACATCCGGG | |
53 CGATGAAGTACTCCGGCCTGTTCATGCACAACTTCACGGGCGGCAGTGCC | |
54 TTCATGAAGAAGGTGTACTCCTCCGTGCACCTGGTGTTCCTCCTCATGCA | |
55 GTTCACCTTCATCCTGGTCAACATGGCCCTGAACGCCGAGGAGGTCAACG | |
56 AGCTGTCGGGCAACACGATCACGACCCTCTTCTTCACCCACTGCATCACG | |
57 AAGTTTATCTACCTGGCTGTTAACCAGAAGAATTTCTACAGGTGAGCCTC | |
58 TGCTCACCGCACCGAGCTTACGAACACTTGGGGAATTTAAAATTTTATGT | |
59 TTTTCCGGCAGAACATTGAATATATGGAACCAGGTGAACACGCATCCCTT | |
60 GTTCGCCGAGTCGGATGCTCGTTACCATTCGATCGCACTGGCGAAGATGA | |
61 GGAAGCTGTTCTTTCTGGTGATGCTGACCACAGTCGCCTCGGCCACCGCC | |
62 TGGACCACGATCACCTTCTTTGGCGACAGCGTAAAAATGGTGGTGGACCA | |
63 TGAGACGAACTCCAGCATCCCGGTGGAGATACCCCGGCTGCCGATTAAGT | |
64 CCTTCTACCCGTGGAACGCCAGCCACGGCATGTTCTACATGATCAGCTTT | |
65 GCCTTTCAGATCTACTACGTGCTCTTCTCGATGATCCACTCCAATCTATG | |
66 CGACGTGATGTTCTGCTCTTGGCTGATATTCGCCTGCGAGCAGCTGCAGC | |
67 ACTTGAAGGGCATCATGAAGCCGCTGATGGAGCTGTCCGCCTCGCTGGAC | |
68 ACCTACAGGCCCAACTCGGCGGCCCTCTTCAGGTCCCTGTCGGCCAACTC | |
69 CAAGTCGGAGCTAATTCATAATGAAGGTGATTTGTTGAGTCTGAACCTAA | |
70 ACTTTTAGGCGGTTATTCAGTGAGCACTTCACTGAATAGGAAAATGCCAT | |
71 GACGAGCTGTTTTTCCATTGCAGAAAAGGATCCCGGCACCGACATGGACA | |
72 TGTCGGGCATCTACAGCTCGAAAGCGGATTGGGGCGCTCAGTTTCGAGCA | |
73 CCCTCGACACTGCAGTCCTTTGGCGGGAACGGGGGCGGAGGCAACGGGTT | |
74 GGTGAACGGCGCTAATCCCAACGGGCTGACCAAAAAGCAGGAGATGATGG | |
75 TGCGCAGTGCCATCAAGTACTGGGTCGAGCGGCACAAGCACGTGGTGCGG | |
76 TGAGTTCAAATCCTGGCCAAATTGGACCAGCCATTTCAAGGGGGCTTTGG | |
77 CCAGTGATGATTGGATTTTTGGCGATTTAAATGGCAGAGCAGTCCACTCA | |
78 TATTTCATGGACTTGGATTTTTGCCTTTAACAGAGCACCGAACATAATAA | |
79 ACACACACACTTTCCCCTCAGTTTTGTAAAACTTCAATAGGCGCCATCGG | |
80 AACATGTGTTCTCATTTATTAGGAGCTCAACAGATCCCTGCAGCTTGTTT | |
81 GACTTACTTGATTACTTCCTCAATTGCAATCATTGTTGGGGGCCCTAGAG | |
82 GAATGTCCTTGTTTGTCCTGTCCGACAGTTGGCGTGTGCAGTTGTTGATA | |
83 CCAATATTGACTTGATTCCTGCCTGCAATCCCTCATCCTTTCCCCCGTTG | |
84 CCTTTTCCCCACAGACTGGTGGCTGCCATCGGCGATACTTACGGAGCCGC | |
85 CCTCCTCCTCCACATGCTGACCTCGACCATCAAGCTGACCCTGCTGGCAT | |
86 ACCAGGCCACCAAAATCAACGGAGTGAATGTCTACGCCTTCACAGTCGTC | |
87 GGATACCTAGGATACGCGCTGGCCCAGGTGTTCCACTTTTGCATCTTTGG | |
88 CAATCGTCTGATTGAAGAGGTGAGTTTGTGCAGGGTTGCAAGATAAATTT | |
89 ATAAGTAAATCAGACATCAGTCTCAACTGATTAATAATCGAGAACATCCT | |
90 TATTTGAGTTATAGGGATATTTATAAAAAATTTTGAGACTTCATTAAAAC | |
91 TAAATGAATTGTAAGTTGAGAGTCAACAGATTGGTCCGTTCACTACAAGC | |
92 TAACCAGTGTGTTTTTTCCATGTGGTAGAAATAAAAGGGTGTTTTTGCGT | |
93 ATGAGATAAAATTGAACCAATGTTTTCAAGTTTATAGATTGGGAAACATA | |
94 CATAGTTCTAAACGTTGTTATAGTTATAGTTTGTGTAGTTAGTTATCTAG | |
95 AGCATCCTTAATACGACTTTCATTTCGCAGAGTTCATCCGTCATGGAGGC | |
96 CGCCTACTCGTGCCACTGGTACGATGGCTCCGAGGAGGCCAAGACCTTCG | |
97 TCCAGATCGTGTGCCAGCAGTGCCAGAAGGCGATGAGCATATCGGGAGCG | |
98 AAATTCTTCACCGTCTCCCTGGATTTGTTTGCTTCGGTTTGTTGCATTTG | |
99 ATTTATTGATCTATTGATGGAGTTAAAACTGAATCGGATATTCCCGATTC | |
100 GCAGGTTCTGGGTGCCGTCGTCACCTACTTTATGGTGCTGGTGCAGCTCA | |
101 AGTAAGTTGCTGCGAAGCTGATGGATTTTTGTACCAGAAAAGCGAATGCC | |
102 AAGAAGCCACCTACCGCCCCTTGCCCCCTCCGCACTGTGCAACCAGCAAT | |
103 ATCACAGAGCAATTATAACGCAAATTATATATTTTATACCTGCGACGAGC | |
104 GAGCCTCGTGGGGCATAATGGAGACATTCTGGGGCACATAGAAGCCTGCA | |
105 AATACTTATCGATTTTGTACACGCGTAGAGCTTTTAATGTAAACCCAAGA | |
106 TGCAAACTAAATAAATGTGTAGTG |