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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="edena" version="3.130110">
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_by_url">http://www.genomic.ch/edena/EdenaV3.130110.tar.gz</action>
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7 <action type="shell_command">make</action>
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8 <action type="move_directory_files">
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9 <source_directory>bin</source_directory>
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10 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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11 </action>
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12 <action type="set_environment">
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13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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14 </action>
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15 <action type="set_environment">
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16 <environment_variable name="EDENA_SITE_OPTIONS" action="set_to">"--nThreads 2"</environment_variable>
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17 </action>
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18 </actions>
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19 </install>
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20 <readme>
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21 Change the EDENA_SITE_OPTIONS variable in the installed env.sh file to adjust the number of threads to use (--nThreads).
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22 </readme>
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23 </package>
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24 </tool_dependency>
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