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comparison get_edge_data.xml @ 0:7af33315bc5e draft

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author crs4
date Mon, 09 Sep 2013 06:11:47 -0400
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1 <tool id="get_edge_data" name="Get EDGE-pro files" version="1.0.1">
2 <description></description>
3 <command interpreter="python">get_edge_data.py -i "$gbkid" --fna $fnafile --ptt $pttfile --rnt $rntfile --gff $gfffile</command>
4
5 <inputs>
6 <param name="gbkid" type="text" value="NC_" label="RefSeq Genomic Accession ID">
7 <validator type="empty_field" />
8 </param>
9 </inputs>
10 <outputs>
11 <data name="fnafile" format="fasta" label="${tool.name} on ${on_string}: FASTA" />
12 <data name="pttfile" format="ptt" label="${tool.name} on ${on_string}: PTT" />
13 <data name="rntfile" format="rnt" label="${tool.name} on ${on_string}: RNT" />
14 <data name="gfffile" format="gff" label="${tool.name} on ${on_string}: GFF" />
15 </outputs>
16 <tests>
17
18 </tests>
19 <help>
20 **What it does**
21
22 This tool retrieves from NCBI the files required by `EDGE-pro`_.
23
24 .. _EDGE-pro: http://ccb.jhu.edu/software/EDGE-pro/
25
26 **License and citation**
27
28 This Galaxy tool is Copyright © 2012-2013 `CRS4 Srl.`_ and is released under the `MIT license`_.
29
30 .. _CRS4 Srl.: http://www.crs4.it/
31 .. _MIT license: http://opensource.org/licenses/MIT
32
33 If you use this tool in Galaxy, please cite |Cuccuru2013|_.
34
35 .. |Cuccuru2013| replace:: Cuccuru, G., Orsini, M., Pinna, A., Sbardellati, A., Soranzo, N., Travaglione, A., Uva, P., Zanetti, G., Fotia, G. (2013) Orione, a web-based framework for NGS analysis in microbiology. *Submitted*
36 .. _Cuccuru2013: http://orione.crs4.it/
37 </help>
38 </tool>