Mercurial > repos > crs4 > exomedepth
changeset 4:9ccde1867fbb draft
Replaces Rscript by R CMD BATCH
| author | crs4 |
|---|---|
| date | Mon, 11 Jun 2018 09:32:44 -0400 |
| parents | 88b89f435f6a |
| children | a0a30c52978a |
| files | exomedepth.R |
| diffstat | 1 files changed, 2 insertions(+), 1 deletions(-) [+] |
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--- a/exomedepth.R Tue Jun 05 18:58:08 2018 -0400 +++ b/exomedepth.R Mon Jun 11 09:32:44 2018 -0400 @@ -3,7 +3,8 @@ # Import parameters from xml wrapper (args_file) args <- commandArgs(trailingOnly=TRUE) -param <- read.table(args[1],sep="=", as.is=TRUE) +eval(parse(text=args[[1]])) +param <- read.table(mypars,sep="=", as.is=TRUE) # Set common parameters target <- param[match("target",param[,1]),2]