Mercurial > repos > crs4 > exomedepth

changeset 5:a0a30c52978a draft

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Replaces Rscript by R CMD BATCH
author crs4
date Mon, 11 Jun 2018 09:33:31 -0400
parents 9ccde1867fbb
children 165732ee5a48
files exomedepth.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/exomedepth.xml	Mon Jun 11 09:32:44 2018 -0400
+++ b/exomedepth.xml	Mon Jun 11 09:33:31 2018 -0400
@@ -3,8 +3,8 @@
   <requirements>
 	  <requirement type="package" version="1.1.10">r-exomedepth</requirement>
   </requirements>
-  <command interpreter="Rscript">
-   exomedepth.R $args_file
+  <command>
+    R CMD BATCH --no-save --no-restore '--args mypars="$args_file"' $__tool_directory__/exomedepth.R
   </command>
   <inputs>
     <param format="bed" name="targetFile" type="data" label="Target regions (BED)">