diff tool-data/blast_reporting_fields.loc.sample @ 0:7db7ecc78ad6 draft

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author damion
date Mon, 02 Mar 2015 20:46:00 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/blast_reporting_fields.loc.sample	Mon Mar 02 20:46:00 2015 -0500
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+#value	type	subtype	sort	filter	default	min	max	choose	short_name	name
+# Remember to edit tool_data_table_conf.xml for column spec!
+length	numeric	int	1	1				1	Length	Alignment length
+qstart	numeric	int	1	1				1	Q. Start	Alignment start in query
+qend	numeric	int	1	1				1	Q. End	Alignment end in query
+sstart	numeric	int	1	1				1	S. Start	Alignment start in subject
+send	numeric	int	1	1				1	S. End	Alignment end in subject
+qseq	text	atgc	0	1				1	Q. Alignment	Aligned part of query sequence
+sseq	text	atgc	0	1				1	S. Alignment	Aligned part of subject sequence
+mseq	text	atgc	0	1				1	Alignment	Alignment, matched part
+#
+bitscore	numeric	int	1	1				1	Bit Score	Bit score
+evalue	numeric	float	1	1				1	E-value	Expectation value
+pcov	numeric	int	1	1				1	% Coverage	% coverage
+gapopen	numeric	int	1	1				1	Gaps-openings	# of gap openings
+gaps	numeric	int	1	1				1	Gaps	Total number of gaps
+mismatch	numeric	int	1	1				1	Mismatches	# of mismatches
+nident	numeric	int	1	1				1	Ident. Matches	# of identical matches
+positive	numeric	int	1	1				1	Pos. Matches	# of positive-scoring matches
+pident	numeric	float	1	1	97	90	100	1	% Identical	% of identical matches
+ppos	numeric	float	1	1				1	% Positive	% of positive-scoring matches
+score	numeric	int	1	1				1	Raw Score	Raw Score
+#
+qseqid	text	int	1	1				1	Query Id	Query sequence id
+qframe	numeric	int	1	1				1	Query Frame	Query frame
+qlen	numeric	int	1	1				1	Query Length	Query sequence length
+#
+accessionid	text		1	1				1	Accession	Subject accession id
+sframe	numeric	int	1	1				1	Subject Frame	Subject frame
+sallseqdescr	text		0	1				1	Subject Descriptions	Subject sequence desc(s) (all)
+sseqdescr	text		1	1				1	Subject Description	Subject sequence desc. (first)
+sseqid	text	int	1	1				1	Subject Id	Subject sequence id
+sallseqid	text		1	1				1	Subject Ids	Subject sequence ids (all)
+slen	numeric	int	1	1				1	Subject Length	Subject sequence length