annotate tool-data/blast_reporting_fields.loc.sample @ 0:7db7ecc78ad6 draft

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author damion
date Mon, 02 Mar 2015 20:46:00 -0500
parents
children
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1 #value type subtype sort filter default min max choose short_name name
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2 # Remember to edit tool_data_table_conf.xml for column spec!
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3 length numeric int 1 1 1 Length Alignment length
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4 qstart numeric int 1 1 1 Q. Start Alignment start in query
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5 qend numeric int 1 1 1 Q. End Alignment end in query
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6 sstart numeric int 1 1 1 S. Start Alignment start in subject
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7 send numeric int 1 1 1 S. End Alignment end in subject
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8 qseq text atgc 0 1 1 Q. Alignment Aligned part of query sequence
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9 sseq text atgc 0 1 1 S. Alignment Aligned part of subject sequence
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10 mseq text atgc 0 1 1 Alignment Alignment, matched part
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11 #
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12 bitscore numeric int 1 1 1 Bit Score Bit score
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13 evalue numeric float 1 1 1 E-value Expectation value
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14 pcov numeric int 1 1 1 % Coverage % coverage
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15 gapopen numeric int 1 1 1 Gaps-openings # of gap openings
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16 gaps numeric int 1 1 1 Gaps Total number of gaps
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17 mismatch numeric int 1 1 1 Mismatches # of mismatches
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18 nident numeric int 1 1 1 Ident. Matches # of identical matches
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19 positive numeric int 1 1 1 Pos. Matches # of positive-scoring matches
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20 pident numeric float 1 1 97 90 100 1 % Identical % of identical matches
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21 ppos numeric float 1 1 1 % Positive % of positive-scoring matches
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22 score numeric int 1 1 1 Raw Score Raw Score
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23 #
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24 qseqid text int 1 1 1 Query Id Query sequence id
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25 qframe numeric int 1 1 1 Query Frame Query frame
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26 qlen numeric int 1 1 1 Query Length Query sequence length
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27 #
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28 accessionid text 1 1 1 Accession Subject accession id
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29 sframe numeric int 1 1 1 Subject Frame Subject frame
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30 sallseqdescr text 0 1 1 Subject Descriptions Subject sequence desc(s) (all)
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31 sseqdescr text 1 1 1 Subject Description Subject sequence desc. (first)
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32 sseqid text int 1 1 1 Subject Id Subject sequence id
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33 sallseqid text 1 1 1 Subject Ids Subject sequence ids (all)
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34 slen numeric int 1 1 1 Subject Length Subject sequence length