Mercurial > repos > damion > blast_reporting
view tool-data/blast_reporting_fields.loc.sample @ 0:7db7ecc78ad6 draft
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author | damion |
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date | Mon, 02 Mar 2015 20:46:00 -0500 |
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#value type subtype sort filter default min max choose short_name name # Remember to edit tool_data_table_conf.xml for column spec! length numeric int 1 1 1 Length Alignment length qstart numeric int 1 1 1 Q. Start Alignment start in query qend numeric int 1 1 1 Q. End Alignment end in query sstart numeric int 1 1 1 S. Start Alignment start in subject send numeric int 1 1 1 S. End Alignment end in subject qseq text atgc 0 1 1 Q. Alignment Aligned part of query sequence sseq text atgc 0 1 1 S. Alignment Aligned part of subject sequence mseq text atgc 0 1 1 Alignment Alignment, matched part # bitscore numeric int 1 1 1 Bit Score Bit score evalue numeric float 1 1 1 E-value Expectation value pcov numeric int 1 1 1 % Coverage % coverage gapopen numeric int 1 1 1 Gaps-openings # of gap openings gaps numeric int 1 1 1 Gaps Total number of gaps mismatch numeric int 1 1 1 Mismatches # of mismatches nident numeric int 1 1 1 Ident. Matches # of identical matches positive numeric int 1 1 1 Pos. Matches # of positive-scoring matches pident numeric float 1 1 97 90 100 1 % Identical % of identical matches ppos numeric float 1 1 1 % Positive % of positive-scoring matches score numeric int 1 1 1 Raw Score Raw Score # qseqid text int 1 1 1 Query Id Query sequence id qframe numeric int 1 1 1 Query Frame Query frame qlen numeric int 1 1 1 Query Length Query sequence length # accessionid text 1 1 1 Accession Subject accession id sframe numeric int 1 1 1 Subject Frame Subject frame sallseqdescr text 0 1 1 Subject Descriptions Subject sequence desc(s) (all) sseqdescr text 1 1 1 Subject Description Subject sequence desc. (first) sseqid text int 1 1 1 Subject Id Subject sequence id sallseqid text 1 1 1 Subject Ids Subject sequence ids (all) slen numeric int 1 1 1 Subject Length Subject sequence length