Mercurial > repos > damion > blast_reporting
diff tool-data/blast_reporting_fields.loc.sample @ 0:7db7ecc78ad6 draft
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author | damion |
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date | Mon, 02 Mar 2015 20:46:00 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/blast_reporting_fields.loc.sample Mon Mar 02 20:46:00 2015 -0500 @@ -0,0 +1,34 @@ +#value type subtype sort filter default min max choose short_name name +# Remember to edit tool_data_table_conf.xml for column spec! +length numeric int 1 1 1 Length Alignment length +qstart numeric int 1 1 1 Q. Start Alignment start in query +qend numeric int 1 1 1 Q. End Alignment end in query +sstart numeric int 1 1 1 S. Start Alignment start in subject +send numeric int 1 1 1 S. End Alignment end in subject +qseq text atgc 0 1 1 Q. Alignment Aligned part of query sequence +sseq text atgc 0 1 1 S. Alignment Aligned part of subject sequence +mseq text atgc 0 1 1 Alignment Alignment, matched part +# +bitscore numeric int 1 1 1 Bit Score Bit score +evalue numeric float 1 1 1 E-value Expectation value +pcov numeric int 1 1 1 % Coverage % coverage +gapopen numeric int 1 1 1 Gaps-openings # of gap openings +gaps numeric int 1 1 1 Gaps Total number of gaps +mismatch numeric int 1 1 1 Mismatches # of mismatches +nident numeric int 1 1 1 Ident. Matches # of identical matches +positive numeric int 1 1 1 Pos. Matches # of positive-scoring matches +pident numeric float 1 1 97 90 100 1 % Identical % of identical matches +ppos numeric float 1 1 1 % Positive % of positive-scoring matches +score numeric int 1 1 1 Raw Score Raw Score +# +qseqid text int 1 1 1 Query Id Query sequence id +qframe numeric int 1 1 1 Query Frame Query frame +qlen numeric int 1 1 1 Query Length Query sequence length +# +accessionid text 1 1 1 Accession Subject accession id +sframe numeric int 1 1 1 Subject Frame Subject frame +sallseqdescr text 0 1 1 Subject Descriptions Subject sequence desc(s) (all) +sseqdescr text 1 1 1 Subject Description Subject sequence desc. (first) +sseqid text int 1 1 1 Subject Id Subject sequence id +sallseqid text 1 1 1 Subject Ids Subject sequence ids (all) +slen numeric int 1 1 1 Subject Length Subject sequence length