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annotate Roary/t/data/core_alignment_gene_lookup/query_1.gff @ 0:c47a5f61bc9f draft

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author dereeper
date Fri, 14 May 2021 20:27:06 +0000
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1 ##gff-version 3
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2 ##sequence-region gnl|IFR|Ef_ABC123_contig000001 1 1320
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3 gnl|IFR|Ef_ABC123_contig000001 Prodigal:2.6 CDS 52 513 . + 0 ID=Ef_ABC123_00010;Parent=Ef_ABC123_00010_gene;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:RefSeq:CJSA_1363;locus_tag=Ef_ABC123_00010;product=CJSA_1363 putative sugar transferase:1372570 reverse MW:76273;protein_id=gnl|IFR|Ef_ABC123_00010
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4 gnl|IFR|Ef_ABC123_contig000001 Prodigal:2.6 CDS 510 746 . + 0 ID=Ef_ABC123_00020;Parent=Ef_ABC123_00020_gene;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:RefSeq:CJSA_1363;locus_tag=Ef_ABC123_00020;product=CJSA_1363 putative sugar transferase:1372570 reverse MW:76273;protein_id=gnl|IFR|Ef_ABC123_00020
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5 gnl|IFR|Ef_ABC123_contig000001 Prodigal:2.6 CDS 878 1207 . + 0 ID=Ef_ABC123_00030;Parent=Ef_ABC123_00030_gene;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:RefSeq:A911_06907;locus_tag=Ef_ABC123_00030;product=A911_06907 putative sugar transferase:1355468 reverse MW:73559;protein_id=gnl|IFR|Ef_ABC123_00030
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6 ##FASTA
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7 >gnl|IFR|Ef_ABC123_contig000001
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8 GAAAAAGAAAAAATAAACTATAAAAACATATCAGCTGAACTTGCTTGGGAAATGAATCTA
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9 CCTTTACCTGATAATTATGAATTTGTGTTTTTATCTGGTGGATTATCTGGGCATGCTGCA
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10 ATGATGTCATTTTTTAATGTTTGTGGCATTGGATATTTGTATCATCATATGGATTTAATG
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11 AAAAATAGATATATAGATTATTACCATTTTTCTAGGATTGAAAATTTATATTCAATTATA
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12 ACATATGGACAATACAGTTTAACGCAAGGAATGAATAATATAGGTAAATATTTGACTTTA
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13 ATTAATAAAATTCCAATTCTTTTTTTGGTAAGAGATCCCATATCAAGACTAAAAACCGGA
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14 GTAAATCATCCTATTCTAAATCCAAAAAGTATGAAGGAGATATGTTTAAACAATGATTAT
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15 AGTGATGTGTTTAAGAATAAAATGTATGTTGGCGATATTGGAAAAAATTTTTACTATTCA
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16 GAAAAGCCAAGCATGAAATATTTACCTAGATGATTAATGAAGATACAATGTATCAGACAT
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17 CGCTTTGCTTATTATTTTCAAATAGAGATATTACTTATATTGACATGGAAGAAATAAAAC
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18 CAGCAAAGGCATTCGATACAATGTGTGATTTAGCTAACAAATTTGGTTTTAAGAAACCAA
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19 CGGATAAAAAATTTTTTGAAGGAGTTATGAATGGAGATTTAGCAGGTTTTATACCTATTA
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20 ATTTATTTATTGATAAAAAAATTTAATTTATAATAACAAAGTTATTTATAAAGATAATGA
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21 TAGCATCCATCTTCAAATCACATCTACAAATTTAATTGAAATTTATAAACAATCTAAAGA
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22 ATATATCAACTTTACTAAAGAATTTTTTGATAAACCTTTGAAATATGAAAATTTGGGAAT
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23 ATTTTTAAAACCACAAGAATTTGAGCGTTTAAAGCAAGATTCTAAGCTATTTGATGTTGC
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24 TAAAAGATATTTGAATAATTTTATTGAAGCTTTAGAAGAGAGAATAGACCTAGAAAAAGC
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25 TAAATTATTTAAAGAAAAAGACGTGTTAAACTATTTAAAAGAAAATAAAGAATTAAGAGT
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26 TAAGTTAAAAAACATATTAGATAAAGAACTTGTTCATATTAAACAACATCGTCCAGATAT
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27 AGTAGCTTCTTGGAAATACTATCAAGAATTTGAACAAATGTGCAAGGAGTTGAATGGTAA
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28 TATTTAGGAGAAAGATTTGTAAATTAATAAAAAAAAGATATAATTGTGTTTAAAATTAGA
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29 GAAAGGAATCAATATGAAACAAGGGGATTTTACAAAAGTTGCAAAACATTATCACAATAG