Mercurial > repos > dereeper > sniplay3_complete_workflow

annotate Galaxy-Workflow-SNiPlay.ga @ 2:0c7db2dca8b4 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
author dereeper
date Tue, 14 Aug 2018 09:37:46 -0400
parents 0bf2b08766d9
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
1 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
2 "a_galaxy_workflow": "true",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
3 "annotation": "",
1
0bf2b08766d9 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
dereeper
parents: 0
diff changeset
4 "format-version": "0.2",
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
5 "name": "SNiPlay Workflow",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
6 "steps": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
7 "0": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
8 "annotation": "",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
9 "content_id": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
10 "errors": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
11 "id": 0,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
12 "input_connections": {},
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
13 "inputs": [],
1
0bf2b08766d9 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
dereeper
parents: 0
diff changeset
14 "label": "Input VCF",
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
15 "name": "Input dataset",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
16 "outputs": [],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
17 "position": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
18 "left": 200,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
19 "top": 273
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
20 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
21 "tool_id": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
22 "tool_state": "{}",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
23 "tool_version": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
24 "type": "data_input",
2
0c7db2dca8b4 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 1
diff changeset
25 "uuid": "1b36351d-d27f-4696-b500-98a27b4d7ea3",
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
26 "workflow_outputs": []
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
27 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
28 "1": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
29 "annotation": "",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
30 "content_id": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
31 "errors": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
32 "id": 1,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
33 "input_connections": {},
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
34 "inputs": [],
1
0bf2b08766d9 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
dereeper
parents: 0
diff changeset
35 "label": "Input Fasta Reference",
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
36 "name": "Input dataset",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
37 "outputs": [],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
38 "position": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
39 "left": 201,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
40 "top": 360
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
41 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
42 "tool_id": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
43 "tool_state": "{}",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
44 "tool_version": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
45 "type": "data_input",
2
0c7db2dca8b4 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 1
diff changeset
46 "uuid": "bc1b70d3-0f2e-4f2c-a690-92c1001aed6e",
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
47 "workflow_outputs": []
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
48 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
49 "2": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
50 "annotation": "",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
51 "content_id": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
52 "errors": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
53 "id": 2,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
54 "input_connections": {},
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
55 "inputs": [],
2
0c7db2dca8b4 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 1
diff changeset
56 "label": "Input GFF Annotation",
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
57 "name": "Input dataset",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
58 "outputs": [],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
59 "position": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
60 "left": 201,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
61 "top": 458
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
62 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
63 "tool_id": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
64 "tool_state": "{}",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
65 "tool_version": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
66 "type": "data_input",
2
0c7db2dca8b4 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 1
diff changeset
67 "uuid": "a4e7ebaf-ce63-4cc1-b516-bafa883ccc81",
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
68 "workflow_outputs": []
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
69 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
70 "3": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
71 "annotation": "",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
72 "content_id": "toolshed.g2.bx.psu.edu/repos/dereeper/vcftools_filter_stats_diversity/sniplay_vcftoolsfilter/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
73 "errors": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
74 "id": 3,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
75 "input_connections": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
76 "input": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
77 "id": 0,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
78 "output_name": "output"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
79 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
80 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
81 "inputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
82 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
83 "description": "runtime parameter for tool VCFtools Filter",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
84 "name": "input"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
85 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
86 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
87 "label": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
88 "name": "VCFtools Filter",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
89 "outputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
90 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
91 "name": "fileout",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
92 "type": "vcf"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
93 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
94 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
95 "name": "fileout_map",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
96 "type": "tabular"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
97 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
98 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
99 "name": "filelog",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
100 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
101 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
102 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
103 "position": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
104 "left": 411,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
105 "top": 221.81666564941406
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
106 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
107 "post_job_actions": {},
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
108 "tool_id": "toolshed.g2.bx.psu.edu/repos/dereeper/vcftools_filter_stats_diversity/sniplay_vcftoolsfilter/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
109 "tool_shed_repository": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
110 "changeset_revision": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
111 "name": "vcftools_filter_stats_diversity",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
112 "owner": "dereeper",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
113 "tool_shed": "toolshed.g2.bx.psu.edu"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
114 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
115 "tool_state": "{\"nb_alleles_min\": \"\\\"2\\\"\", \"chromosomes\": \"\\\"\\\"\", \"__page__\": null, \"nb_alleles_max\": \"\\\"4\\\"\", \"type_p\": \"\\\"ALL\\\"\", \"allow_missing\": \"\\\"0.0\\\"\", \"fileout_label\": \"\\\"filtered\\\"\", \"frequency\": \"\\\"0.001\\\"\", \"export\": \"\\\"VCF\\\"\", \"samples\": \"\\\"\\\"\", \"bound_end\": \"\\\"100000000\\\"\", \"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"max_freq\": \"\\\"0.5\\\"\", \"__rerun_remap_job_id__\": null, \"bound_start\": \"\\\"1\\\"\"}",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
116 "tool_version": "2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
117 "type": "tool",
2
0c7db2dca8b4 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 1
diff changeset
118 "uuid": "46ae7024-01b1-4f7c-a98a-7120fcc5a100",
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
119 "workflow_outputs": []
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
120 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
121 "4": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
122 "annotation": "",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
123 "content_id": "toolshed.g2.bx.psu.edu/repos/dereeper/snpeff_from_gff_vcf/snpEff/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
124 "errors": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
125 "id": 4,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
126 "input_connections": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
127 "genome": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
128 "id": 1,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
129 "output_name": "output"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
130 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
131 "gff": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
132 "id": 2,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
133 "output_name": "output"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
134 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
135 "vcf": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
136 "id": 3,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
137 "output_name": "fileout"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
138 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
139 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
140 "inputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
141 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
142 "description": "runtime parameter for tool SnpEff",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
143 "name": "gff"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
144 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
145 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
146 "description": "runtime parameter for tool SnpEff",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
147 "name": "genome"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
148 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
149 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
150 "description": "runtime parameter for tool SnpEff",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
151 "name": "vcf"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
152 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
153 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
154 "label": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
155 "name": "SnpEff",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
156 "outputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
157 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
158 "name": "output",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
159 "type": "vcf"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
160 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
161 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
162 "name": "statsFile",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
163 "type": "html"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
164 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
165 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
166 "name": "log",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
167 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
168 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
169 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
170 "position": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
171 "left": 393,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
172 "top": 429
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
173 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
174 "post_job_actions": {},
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
175 "tool_id": "toolshed.g2.bx.psu.edu/repos/dereeper/snpeff_from_gff_vcf/snpEff/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
176 "tool_shed_repository": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
177 "changeset_revision": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
178 "name": "snpeff_from_gff_vcf",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
179 "owner": "dereeper",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
180 "tool_shed": "toolshed.g2.bx.psu.edu"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
181 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
182 "tool_state": "{\"__page__\": null, \"__rerun_remap_job_id__\": null, \"gff\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"genome\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"vcf\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
183 "tool_version": "2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
184 "type": "tool",
2
0c7db2dca8b4 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 1
diff changeset
185 "uuid": "21c3aa6f-3c39-45ff-86ed-8ea8123406f6",
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
186 "workflow_outputs": []
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
187 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
188 "5": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
189 "annotation": "",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
190 "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_filter/4.3.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
191 "errors": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
192 "id": 5,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
193 "input_connections": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
194 "input": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
195 "id": 4,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
196 "output_name": "output"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
197 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
198 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
199 "inputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
200 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
201 "description": "runtime parameter for tool SnpSift Filter",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
202 "name": "input"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
203 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
204 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
205 "label": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
206 "name": "SnpSift Filter",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
207 "outputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
208 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
209 "name": "output",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
210 "type": "vcf"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
211 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
212 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
213 "position": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
214 "left": 604,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
215 "top": 326
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
216 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
217 "post_job_actions": {},
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
218 "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_filter/4.3.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
219 "tool_shed_repository": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
220 "changeset_revision": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
221 "name": "snpsift",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
222 "owner": "iuc",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
223 "tool_shed": "toolshed.g2.bx.psu.edu"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
224 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
225 "tool_state": "{\"__page__\": null, \"inverse\": \"\\\"false\\\"\", \"expr\": \"\\\"(FILTER != 'LowQual')\\\"\", \"__rerun_remap_job_id__\": null, \"filtering\": \"{\\\"mode\\\": \\\"entries\\\", \\\"__current_case__\\\": 0}\", \"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
226 "tool_version": "4.3.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
227 "type": "tool",
2
0c7db2dca8b4 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 1
diff changeset
228 "uuid": "412c90d9-3f5d-4252-aaab-d850f370592b",
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
229 "workflow_outputs": []
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
230 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
231 "6": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
232 "annotation": "",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
233 "content_id": "toolshed.g2.bx.psu.edu/repos/dereeper/vcftools_filter_stats_diversity/sniplay_vcftoolsfilter/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
234 "errors": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
235 "id": 6,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
236 "input_connections": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
237 "input": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
238 "id": 5,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
239 "output_name": "output"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
240 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
241 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
242 "inputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
243 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
244 "description": "runtime parameter for tool VCFtools Filter",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
245 "name": "input"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
246 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
247 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
248 "label": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
249 "name": "VCFtools Filter",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
250 "outputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
251 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
252 "name": "fileout",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
253 "type": "vcf"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
254 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
255 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
256 "name": "fileout_map",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
257 "type": "tabular"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
258 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
259 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
260 "name": "filelog",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
261 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
262 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
263 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
264 "position": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
265 "left": 678,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
266 "top": 482.816650390625
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
267 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
268 "post_job_actions": {},
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
269 "tool_id": "toolshed.g2.bx.psu.edu/repos/dereeper/vcftools_filter_stats_diversity/sniplay_vcftoolsfilter/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
270 "tool_shed_repository": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
271 "changeset_revision": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
272 "name": "vcftools_filter_stats_diversity",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
273 "owner": "dereeper",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
274 "tool_shed": "toolshed.g2.bx.psu.edu"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
275 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
276 "tool_state": "{\"nb_alleles_min\": \"\\\"2\\\"\", \"chromosomes\": \"\\\"\\\"\", \"__page__\": null, \"nb_alleles_max\": \"\\\"2\\\"\", \"type_p\": \"\\\"ALL\\\"\", \"allow_missing\": \"\\\"0.0\\\"\", \"fileout_label\": \"\\\"filtered\\\"\", \"frequency\": \"\\\"0.001\\\"\", \"export\": \"\\\"VCF\\\"\", \"samples\": \"\\\"\\\"\", \"bound_end\": \"\\\"100000000\\\"\", \"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"max_freq\": \"\\\"0.5\\\"\", \"__rerun_remap_job_id__\": null, \"bound_start\": \"\\\"1\\\"\"}",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
277 "tool_version": "2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
278 "type": "tool",
2
0c7db2dca8b4 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 1
diff changeset
279 "uuid": "6e1f8c9e-d9d4-4615-b491-ff2dcdd7f7aa",
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
280 "workflow_outputs": []
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
281 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
282 "7": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
283 "annotation": "",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
284 "content_id": "toolshed.g2.bx.psu.edu/repos/dereeper/vcftools_filter_stats_diversity/sniplay_vcftoolsfilter/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
285 "errors": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
286 "id": 7,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
287 "input_connections": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
288 "input": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
289 "id": 6,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
290 "output_name": "fileout"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
291 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
292 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
293 "inputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
294 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
295 "description": "runtime parameter for tool VCFtools Filter",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
296 "name": "input"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
297 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
298 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
299 "label": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
300 "name": "VCFtools Filter",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
301 "outputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
302 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
303 "name": "fileout",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
304 "type": "vcf"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
305 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
306 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
307 "name": "fileout_map",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
308 "type": "tabular"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
309 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
310 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
311 "name": "filelog",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
312 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
313 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
314 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
315 "position": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
316 "left": 378,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
317 "top": 716.816650390625
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
318 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
319 "post_job_actions": {},
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
320 "tool_id": "toolshed.g2.bx.psu.edu/repos/dereeper/vcftools_filter_stats_diversity/sniplay_vcftoolsfilter/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
321 "tool_shed_repository": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
322 "changeset_revision": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
323 "name": "vcftools_filter_stats_diversity",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
324 "owner": "dereeper",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
325 "tool_shed": "toolshed.g2.bx.psu.edu"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
326 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
327 "tool_state": "{\"nb_alleles_min\": \"\\\"2\\\"\", \"chromosomes\": \"\\\"\\\"\", \"__page__\": null, \"nb_alleles_max\": \"\\\"2\\\"\", \"type_p\": \"\\\"SNP\\\"\", \"allow_missing\": \"\\\"0.0\\\"\", \"fileout_label\": \"\\\"filtered\\\"\", \"frequency\": \"\\\"0.001\\\"\", \"export\": \"\\\"plink\\\"\", \"samples\": \"\\\"\\\"\", \"bound_end\": \"\\\"100000000\\\"\", \"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"max_freq\": \"\\\"0.5\\\"\", \"__rerun_remap_job_id__\": null, \"bound_start\": \"\\\"1\\\"\"}",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
328 "tool_version": "2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
329 "type": "tool",
2
0c7db2dca8b4 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 1
diff changeset
330 "uuid": "04b09dcc-9d15-4403-9996-3a87f3cd2503",
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
331 "workflow_outputs": []
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
332 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
333 "8": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
334 "annotation": "",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
335 "content_id": "toolshed.g2.bx.psu.edu/repos/dereeper/vcftools_filter_stats_diversity/sniplay_vcftoolsstats/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
336 "errors": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
337 "id": 8,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
338 "input_connections": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
339 "filein": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
340 "id": 6,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
341 "output_name": "fileout"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
342 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
343 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
344 "inputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
345 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
346 "description": "runtime parameter for tool VCFtools Stats",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
347 "name": "filein"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
348 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
349 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
350 "label": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
351 "name": "VCFtools Stats",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
352 "outputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
353 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
354 "name": "fileout_het",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
355 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
356 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
357 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
358 "name": "fileout_imiss",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
359 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
360 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
361 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
362 "name": "fileout_sum",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
363 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
364 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
365 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
366 "name": "filelog",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
367 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
368 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
369 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
370 "position": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
371 "left": 848,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
372 "top": 291.81666564941406
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
373 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
374 "post_job_actions": {},
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
375 "tool_id": "toolshed.g2.bx.psu.edu/repos/dereeper/vcftools_filter_stats_diversity/sniplay_vcftoolsstats/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
376 "tool_shed_repository": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
377 "changeset_revision": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
378 "name": "vcftools_filter_stats_diversity",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
379 "owner": "dereeper",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
380 "tool_shed": "toolshed.g2.bx.psu.edu"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
381 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
382 "tool_state": "{\"fileout_label\": \"\\\"vcf_stats\\\"\", \"__page__\": null, \"__rerun_remap_job_id__\": null, \"filein\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
383 "tool_version": "2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
384 "type": "tool",
2
0c7db2dca8b4 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 1
diff changeset
385 "uuid": "d9f81699-84bb-4bcd-8eb8-701a9779a819",
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
386 "workflow_outputs": []
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
387 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
388 "9": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
389 "annotation": "",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
390 "content_id": "toolshed.g2.bx.psu.edu/repos/dereeper/vcftools_filter_stats_diversity/sniplay_vcftoolsslidingwindow/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
391 "errors": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
392 "id": 9,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
393 "input_connections": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
394 "filein": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
395 "id": 6,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
396 "output_name": "fileout"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
397 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
398 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
399 "inputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
400 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
401 "description": "runtime parameter for tool VCFtools SlidingWindow",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
402 "name": "group"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
403 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
404 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
405 "description": "runtime parameter for tool VCFtools SlidingWindow",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
406 "name": "filein"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
407 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
408 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
409 "label": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
410 "name": "VCFtools SlidingWindow",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
411 "outputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
412 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
413 "name": "fileout_snp",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
414 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
415 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
416 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
417 "name": "fileout_taj",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
418 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
419 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
420 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
421 "name": "fileout_tstv",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
422 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
423 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
424 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
425 "name": "fileout_windowed",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
426 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
427 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
428 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
429 "name": "filelog",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
430 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
431 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
432 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
433 "name": "fileout_fst",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
434 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
435 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
436 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
437 "name": "fileout_fst_marker",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
438 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
439 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
440 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
441 "name": "fileout_windowed_combined",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
442 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
443 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
444 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
445 "name": "fileout_taj_combined",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
446 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
447 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
448 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
449 "name": "fileout_tstv_combined",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
450 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
451 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
452 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
453 "name": "fileout_snp_combined",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
454 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
455 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
456 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
457 "position": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
458 "left": 1029,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
459 "top": 242.81666564941406
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
460 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
461 "post_job_actions": {},
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
462 "tool_id": "toolshed.g2.bx.psu.edu/repos/dereeper/vcftools_filter_stats_diversity/sniplay_vcftoolsslidingwindow/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
463 "tool_shed_repository": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
464 "changeset_revision": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
465 "name": "vcftools_filter_stats_diversity",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
466 "owner": "dereeper",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
467 "tool_shed": "toolshed.g2.bx.psu.edu"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
468 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
469 "tool_state": "{\"__page__\": null, \"group\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"fileout_label\": \"\\\"snp_density\\\"\", \"window\": \"\\\"200000\\\"\", \"filein\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
470 "tool_version": "2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
471 "type": "tool",
2
0c7db2dca8b4 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 1
diff changeset
472 "uuid": "31b0c431-a2e5-4fb3-b008-e59daab6c1dc",
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
473 "workflow_outputs": []
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
474 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
475 "10": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
476 "annotation": "",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
477 "content_id": "toolshed.g2.bx.psu.edu/repos/dereeper/snmf/snmf/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
478 "errors": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
479 "id": 10,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
480 "input_connections": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
481 "vcf": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
482 "id": 6,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
483 "output_name": "fileout"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
484 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
485 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
486 "inputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
487 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
488 "description": "runtime parameter for tool sNMF",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
489 "name": "vcf"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
490 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
491 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
492 "label": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
493 "name": "sNMF",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
494 "outputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
495 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
496 "name": "best_k_output",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
497 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
498 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
499 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
500 "name": "best_k_groups",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
501 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
502 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
503 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
504 "name": "best_k_logfile",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
505 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
506 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
507 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
508 "name": "outputs",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
509 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
510 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
511 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
512 "name": "logs",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
513 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
514 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
515 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
516 "position": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
517 "left": 1284.800048828125,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
518 "top": 444.1166687011719
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
519 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
520 "post_job_actions": {},
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
521 "tool_id": "toolshed.g2.bx.psu.edu/repos/dereeper/snmf/snmf/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
522 "tool_shed_repository": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
523 "changeset_revision": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
524 "name": "snmf",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
525 "owner": "dereeper",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
526 "tool_shed": "toolshed.g2.bx.psu.edu"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
527 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
528 "tool_state": "{\"__page__\": null, \"vcf\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"kmin\": \"\\\"2\\\"\", \"threshold_group\": \"\\\"50\\\"\", \"kmax\": \"\\\"5\\\"\"}",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
529 "tool_version": "2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
530 "type": "tool",
2
0c7db2dca8b4 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 1
diff changeset
531 "uuid": "84d98dfd-3b2d-4b5e-b67e-1bc3183c036c",
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
532 "workflow_outputs": []
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
533 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
534 "11": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
535 "annotation": "",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
536 "content_id": "toolshed.g2.bx.psu.edu/repos/dereeper/sniplay/sniplay_density/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
537 "errors": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
538 "id": 11,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
539 "input_connections": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
540 "filein": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
541 "id": 6,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
542 "output_name": "fileout"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
543 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
544 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
545 "inputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
546 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
547 "description": "runtime parameter for tool SNP density",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
548 "name": "filein"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
549 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
550 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
551 "label": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
552 "name": "SNP density",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
553 "outputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
554 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
555 "name": "fileout",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
556 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
557 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
558 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
559 "name": "fileout_bysample",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
560 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
561 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
562 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
563 "position": {
2
0c7db2dca8b4 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 1
diff changeset
564 "left": 1237,
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
565 "top": 657.816650390625
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
566 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
567 "post_job_actions": {},
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
568 "tool_id": "toolshed.g2.bx.psu.edu/repos/dereeper/sniplay/sniplay_density/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
569 "tool_shed_repository": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
570 "changeset_revision": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
571 "name": "sniplay",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
572 "owner": "dereeper",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
573 "tool_shed": "toolshed.g2.bx.psu.edu"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
574 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
575 "tool_state": "{\"fileout_label\": \"\\\"densities\\\"\", \"__page__\": null, \"step\": \"\\\"200000\\\"\", \"__rerun_remap_job_id__\": null, \"filein\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
576 "tool_version": "2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
577 "type": "tool",
2
0c7db2dca8b4 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 1
diff changeset
578 "uuid": "f1c0ca03-2ac7-4941-a014-d875ffa34b5d",
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
579 "workflow_outputs": []
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
580 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
581 "12": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
582 "annotation": "",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
583 "content_id": "toolshed.g2.bx.psu.edu/repos/dereeper/sniplay/sniplay_mdsplot/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
584 "errors": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
585 "id": 12,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
586 "input_connections": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
587 "filemap": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
588 "id": 7,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
589 "output_name": "fileout_map"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
590 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
591 "fileped": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
592 "id": 7,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
593 "output_name": "fileout"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
594 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
595 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
596 "inputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
597 {
2
0c7db2dca8b4 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 1
diff changeset
598 "description": "runtime parameter for tool PLINK: MDS plot",
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
599 "name": "groups"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
600 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
601 {
2
0c7db2dca8b4 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 1
diff changeset
602 "description": "runtime parameter for tool PLINK: MDS plot",
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
603 "name": "fileped"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
604 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
605 {
2
0c7db2dca8b4 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 1
diff changeset
606 "description": "runtime parameter for tool PLINK: MDS plot",
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
607 "name": "filemap"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
608 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
609 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
610 "label": null,
2
0c7db2dca8b4 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 1
diff changeset
611 "name": "PLINK: MDS plot",
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
612 "outputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
613 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
614 "name": "fileout_matrix",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
615 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
616 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
617 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
618 "name": "fileout_plot",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
619 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
620 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
621 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
622 "name": "fileout_log",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
623 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
624 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
625 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
626 "position": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
627 "left": 731,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
628 "top": 675.816650390625
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
629 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
630 "post_job_actions": {},
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
631 "tool_id": "toolshed.g2.bx.psu.edu/repos/dereeper/sniplay/sniplay_mdsplot/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
632 "tool_shed_repository": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
633 "changeset_revision": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
634 "name": "sniplay",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
635 "owner": "dereeper",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
636 "tool_shed": "toolshed.g2.bx.psu.edu"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
637 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
638 "tool_state": "{\"__page__\": null, \"fileped\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"filemap\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"fileout_label\": \"\\\"analyse\\\"\", \"groups\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
639 "tool_version": "2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
640 "type": "tool",
2
0c7db2dca8b4 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 1
diff changeset
641 "uuid": "4a40c204-aca3-4329-9518-e53608f2633b",
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
642 "workflow_outputs": []
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
643 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
644 "13": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
645 "annotation": "",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
646 "content_id": "toolshed.g2.bx.psu.edu/repos/dereeper/sniplay/sniplay_pedToFasta/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
647 "errors": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
648 "id": 13,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
649 "input_connections": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
650 "filein": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
651 "id": 7,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
652 "output_name": "fileout"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
653 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
654 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
655 "inputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
656 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
657 "description": "runtime parameter for tool Ped2Fasta",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
658 "name": "filein"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
659 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
660 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
661 "label": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
662 "name": "Ped2Fasta",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
663 "outputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
664 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
665 "name": "fileout",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
666 "type": "fasta"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
667 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
668 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
669 "position": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
670 "left": 592,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
671 "top": 907.816650390625
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
672 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
673 "post_job_actions": {},
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
674 "tool_id": "toolshed.g2.bx.psu.edu/repos/dereeper/sniplay/sniplay_pedToFasta/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
675 "tool_shed_repository": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
676 "changeset_revision": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
677 "name": "sniplay",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
678 "owner": "dereeper",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
679 "tool_shed": "toolshed.g2.bx.psu.edu"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
680 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
681 "tool_state": "{\"fileout_label\": \"\\\"filtered\\\"\", \"__page__\": null, \"__rerun_remap_job_id__\": null, \"filein\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
682 "tool_version": "2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
683 "type": "tool",
2
0c7db2dca8b4 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 1
diff changeset
684 "uuid": "faae8ed2-1b27-4bcf-861d-0e8ef08d5ec5",
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
685 "workflow_outputs": []
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
686 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
687 "14": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
688 "annotation": "",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
689 "content_id": "toolshed.g2.bx.psu.edu/repos/dereeper/sniplay/ped2bed/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
690 "errors": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
691 "id": 14,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
692 "input_connections": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
693 "map": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
694 "id": 7,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
695 "output_name": "fileout_map"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
696 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
697 "ped": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
698 "id": 7,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
699 "output_name": "fileout"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
700 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
701 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
702 "inputs": [],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
703 "label": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
704 "name": "PLINK: ped2bed",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
705 "outputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
706 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
707 "name": "bed",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
708 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
709 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
710 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
711 "name": "fam",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
712 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
713 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
714 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
715 "name": "bim",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
716 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
717 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
718 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
719 "name": "logs",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
720 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
721 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
722 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
723 "position": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
724 "left": 934.5,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
725 "top": 714
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
726 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
727 "post_job_actions": {},
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
728 "tool_id": "toolshed.g2.bx.psu.edu/repos/dereeper/sniplay/ped2bed/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
729 "tool_shed_repository": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
730 "changeset_revision": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
731 "name": "sniplay",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
732 "owner": "dereeper",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
733 "tool_shed": "toolshed.g2.bx.psu.edu"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
734 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
735 "tool_state": "{\"ped\": \"{\\\"values\\\": [{\\\"src\\\": \\\"hda\\\", \\\"id\\\": 36321}]}\", \"map\": \"{\\\"values\\\": [{\\\"src\\\": \\\"hda\\\", \\\"id\\\": 36321}]}\", \"__rerun_remap_job_id__\": null, \"__page__\": null}",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
736 "tool_version": "2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
737 "type": "tool",
2
0c7db2dca8b4 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 1
diff changeset
738 "uuid": "51b9be40-fdd1-46c7-8dba-fd7f08165ea3",
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
739 "workflow_outputs": []
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
740 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
741 "15": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
742 "annotation": "",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
743 "content_id": "toolshed.g2.bx.psu.edu/repos/dereeper/readseq/sniplay_readseq/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
744 "errors": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
745 "id": 15,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
746 "input_connections": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
747 "filein": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
748 "id": 13,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
749 "output_name": "fileout"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
750 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
751 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
752 "inputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
753 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
754 "description": "runtime parameter for tool Readseq",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
755 "name": "filein"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
756 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
757 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
758 "label": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
759 "name": "Readseq",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
760 "outputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
761 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
762 "name": "fileout_log",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
763 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
764 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
765 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
766 "name": "fileout",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
767 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
768 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
769 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
770 "position": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
771 "left": 835,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
772 "top": 963.816650390625
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
773 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
774 "post_job_actions": {},
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
775 "tool_id": "toolshed.g2.bx.psu.edu/repos/dereeper/readseq/sniplay_readseq/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
776 "tool_shed_repository": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
777 "changeset_revision": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
778 "name": "readseq",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
779 "owner": "dereeper",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
780 "tool_shed": "toolshed.g2.bx.psu.edu"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
781 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
782 "tool_state": "{\"fileout_label\": \"\\\"phylip conversion\\\"\", \"__page__\": null, \"__rerun_remap_job_id__\": null, \"filein\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"format\": \"\\\"12\\\"\"}",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
783 "tool_version": "2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
784 "type": "tool",
2
0c7db2dca8b4 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 1
diff changeset
785 "uuid": "3dc8727e-0ca2-4c8b-8e4c-059d16576d08",
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
786 "workflow_outputs": []
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
787 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
788 "16": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
789 "annotation": "",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
790 "content_id": "toolshed.g2.bx.psu.edu/repos/dereeper/fastme/fastme/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
791 "errors": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
792 "id": 16,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
793 "input_connections": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
794 "input": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
795 "id": 15,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
796 "output_name": "fileout"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
797 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
798 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
799 "inputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
800 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
801 "description": "runtime parameter for tool FastME",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
802 "name": "input"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
803 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
804 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
805 "label": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
806 "name": "FastME",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
807 "outputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
808 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
809 "name": "outputTree",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
810 "type": "nhx"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
811 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
812 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
813 "name": "outputLog",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
814 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
815 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
816 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
817 "name": "outputBoostrap",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
818 "type": "nhx"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
819 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
820 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
821 "name": "outputMatrix",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
822 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
823 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
824 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
825 "position": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
826 "left": 1132,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
827 "top": 925.816650390625
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
828 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
829 "post_job_actions": {},
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
830 "tool_id": "toolshed.g2.bx.psu.edu/repos/dereeper/fastme/fastme/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
831 "tool_shed_repository": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
832 "changeset_revision": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
833 "name": "fastme",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
834 "owner": "dereeper",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
835 "tool_shed": "toolshed.g2.bx.psu.edu"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
836 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
837 "tool_state": "{\"distance\": \"\\\"--method=I\\\"\", \"__page__\": null, \"equilibrium\": \"\\\"false\\\"\", \"__rerun_remap_job_id__\": null, \"bootChoice\": \"{\\\"boot\\\": \\\"false\\\", \\\"__current_case__\\\": 0}\", \"treeRefinement\": \"\\\"--spr\\\"\", \"gammaChoice\": \"{\\\"__current_case__\\\": 1, \\\"gamma\\\": \\\"false\\\"}\", \"fileout_label\": \"\\\"Newick tree\\\"\", \"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"typeChoice\": \"{\\\"datatype\\\": \\\"d\\\", \\\"modeldna\\\": \\\"4\\\", \\\"__current_case__\\\": 0}\", \"removeGap\": \"\\\"\\\"\"}",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
838 "tool_version": "2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
839 "type": "tool",
2
0c7db2dca8b4 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 1
diff changeset
840 "uuid": "0f479ac4-fcfa-4b14-b2af-b37891f64e78",
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
841 "workflow_outputs": []
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
842 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
843 "17": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
844 "annotation": "",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
845 "content_id": "toolshed.g2.bx.psu.edu/repos/dereeper/sniplay/sniplay_rooting/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
846 "errors": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
847 "id": 17,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
848 "input_connections": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
849 "filein": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
850 "id": 16,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
851 "output_name": "outputTree"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
852 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
853 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
854 "inputs": [],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
855 "label": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
856 "name": "Rooting",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
857 "outputs": [
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
858 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
859 "name": "fileout_log",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
860 "type": "txt"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
861 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
862 {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
863 "name": "fileout",
1
0bf2b08766d9 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
dereeper
parents: 0
diff changeset
864 "type": "nhx"
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
865 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
866 ],
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
867 "position": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
868 "left": 1296,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
869 "top": 798
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
870 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
871 "post_job_actions": {},
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
872 "tool_id": "toolshed.g2.bx.psu.edu/repos/dereeper/sniplay/sniplay_rooting/2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
873 "tool_shed_repository": {
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
874 "changeset_revision": null,
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
875 "name": "sniplay",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
876 "owner": "dereeper",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
877 "tool_shed": "toolshed.g2.bx.psu.edu"
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
878 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
879 "tool_state": "{\"fileout_label\": \"\\\"out tree\\\"\", \"__page__\": null, \"__rerun_remap_job_id__\": null, \"filein\": \"{\\\"values\\\": [{\\\"src\\\": \\\"hda\\\", \\\"id\\\": 36319}]}\"}",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
880 "tool_version": "2.0.0",
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
881 "type": "tool",
2
0c7db2dca8b4 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 1
diff changeset
882 "uuid": "c49727bf-cb46-4cf6-998c-539977b1a419",
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
883 "workflow_outputs": []
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
884 }
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
885 },
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
886 "tags": [],
2
0c7db2dca8b4 planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f-dirty
dereeper
parents: 1
diff changeset
887 "uuid": "6cb99c2c-e345-4e5b-b1c3-80172449e6bd"
0
b9f2901a4b00 planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff changeset
888 }