Mercurial > repos > devteam > data_manager_gatk_picard_index_builder

annotate data_manager_conf.xml @ 0:619dd9e9c09c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Imported from capsule None
author devteam
date Tue, 01 Apr 2014 10:48:03 -0400
parents
children 9a40272f56d0
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
619dd9e9c09c Imported from capsule None
devteam
parents:
diff changeset
1 <?xml version="1.0"?>
619dd9e9c09c Imported from capsule None
devteam
parents:
diff changeset
2 <data_managers>
619dd9e9c09c Imported from capsule None
devteam
parents:
diff changeset
3 <data_manager tool_file="data_manager/data_manager_gatk_picard_index_builder.xml" id="gatk_picard_index_builder" version="0.0.1">
619dd9e9c09c Imported from capsule None
devteam
parents:
diff changeset
4 <data_table name="gatk_picard_indexes">
619dd9e9c09c Imported from capsule None
devteam
parents:
diff changeset
5 <output>
619dd9e9c09c Imported from capsule None
devteam
parents:
diff changeset
6 <column name="value" />
619dd9e9c09c Imported from capsule None
devteam
parents:
diff changeset
7 <column name="dbkey" />
619dd9e9c09c Imported from capsule None
devteam
parents:
diff changeset
8 <column name="name" />
619dd9e9c09c Imported from capsule None
devteam
parents:
diff changeset
9 <column name="path" output_ref="out_file" >
619dd9e9c09c Imported from capsule None
devteam
parents:
diff changeset
10 <move type="directory" relativize_symlinks="True">
619dd9e9c09c Imported from capsule None
devteam
parents:
diff changeset
11 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
619dd9e9c09c Imported from capsule None
devteam
parents:
diff changeset
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/gatk_picard_index/${value}</target>
619dd9e9c09c Imported from capsule None
devteam
parents:
diff changeset
13 </move>
619dd9e9c09c Imported from capsule None
devteam
parents:
diff changeset
14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/gatk_picard_index/${value}/${path}</value_translation>
619dd9e9c09c Imported from capsule None
devteam
parents:
diff changeset
15 <value_translation type="function">abspath</value_translation>
619dd9e9c09c Imported from capsule None
devteam
parents:
diff changeset
16 </column>
619dd9e9c09c Imported from capsule None
devteam
parents:
diff changeset
17 </output>
619dd9e9c09c Imported from capsule None
devteam
parents:
diff changeset
18 </data_table>
619dd9e9c09c Imported from capsule None
devteam
parents:
diff changeset
19 </data_manager>
619dd9e9c09c Imported from capsule None
devteam
parents:
diff changeset
20 </data_managers>