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1 #!/usr/bin/env python
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2
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3 """
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4 Script that Creates a zip file for use by GMAJ
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5 """
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6 import sys, zipfile
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7
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8 def __main__():
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9 #create a new zip file
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10 out_file = zipfile.ZipFile( sys.argv[1], "w" )
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11 #add info files
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12 out_file.write( sys.argv[3], "input.gmaj" ) #THIS FILE MUST BE ADDED FIRST
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13 out_file.write( sys.argv[2], "input.maf" )
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14
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15 #add annotation files
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16 for line in open( sys.argv[4] ):
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17 try:
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18 out_file.write( *[ field.strip() for field in line.split( "=", 1 ) ] )
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19 except:
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20 continue
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21 out_file.close()
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22
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23 if __name__ == "__main__": __main__()
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