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comparison GMAJ.py @ 0:2cd5ee197ec7 draft default tip

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Imported from capsule None
author devteam
date Mon, 27 Jan 2014 09:26:22 -0500
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-1:000000000000 0:2cd5ee197ec7
1 #!/usr/bin/env python
2
3 """
4 Script that Creates a zip file for use by GMAJ
5 """
6 import sys, zipfile
7
8 def __main__():
9 #create a new zip file
10 out_file = zipfile.ZipFile( sys.argv[1], "w" )
11 #add info files
12 out_file.write( sys.argv[3], "input.gmaj" ) #THIS FILE MUST BE ADDED FIRST
13 out_file.write( sys.argv[2], "input.maf" )
14
15 #add annotation files
16 for line in open( sys.argv[4] ):
17 try:
18 out_file.write( *[ field.strip() for field in line.split( "=", 1 ) ] )
19 except:
20 continue
21 out_file.close()
22
23 if __name__ == "__main__": __main__()