Mercurial > repos > devteam > ncbi_blast_plus
annotate test-data/tblastn_four_human_vs_rhodopsin.xml @ 31:0e3cf9594bb7 draft
Update with window size fix
author | peterjc |
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date | Tue, 07 Jun 2022 12:15:44 +0000 |
parents | 5edc472ec434 |
children | a52d2d93e595 |
rev | line source |
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0 | 1 <?xml version="1.0"?> |
8
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2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> |
0 | 3 <BlastOutput> |
4 <BlastOutput_program>tblastn</BlastOutput_program> | |
29 | 5 <BlastOutput_version>TBLASTN 2.10.1+</BlastOutput_version> |
0 | 6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> |
7 <BlastOutput_db></BlastOutput_db> | |
8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> | |
9 <BlastOutput_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</BlastOutput_query-def> | |
10 <BlastOutput_query-len>406</BlastOutput_query-len> | |
11 <BlastOutput_param> | |
12 <Parameters> | |
13 <Parameters_matrix>BLOSUM80</Parameters_matrix> | |
14 <Parameters_expect>1e-10</Parameters_expect> | |
15 <Parameters_gap-open>10</Parameters_gap-open> | |
16 <Parameters_gap-extend>1</Parameters_gap-extend> | |
17 <Parameters_filter>F</Parameters_filter> | |
18 </Parameters> | |
19 </BlastOutput_param> | |
11
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20 <BlastOutput_iterations> |
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21 <Iteration> |
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22 <Iteration_iter-num>1</Iteration_iter-num> |
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23 <Iteration_query-ID>Query_1</Iteration_query-ID> |
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24 <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> |
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25 <Iteration_query-len>406</Iteration_query-len> |
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26 <Iteration_hits> |
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27 </Iteration_hits> |
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28 <Iteration_stat> |
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29 <Statistics> |
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30 <Statistics_db-num>0</Statistics_db-num> |
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31 <Statistics_db-len>0</Statistics_db-len> |
21
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32 <Statistics_hsp-len>27</Statistics_hsp-len> |
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33 <Statistics_eff-space>1239330</Statistics_eff-space> |
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34 <Statistics_kappa>0.071</Statistics_kappa> |
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35 <Statistics_lambda>0.299</Statistics_lambda> |
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36 <Statistics_entropy>0.27</Statistics_entropy> |
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37 </Statistics> |
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38 </Iteration_stat> |
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39 <Iteration_message>No hits found</Iteration_message> |
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40 </Iteration> |
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41 <Iteration> |
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42 <Iteration_iter-num>2</Iteration_iter-num> |
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43 <Iteration_query-ID>Query_2</Iteration_query-ID> |
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44 <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> |
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45 <Iteration_query-len>1161</Iteration_query-len> |
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46 <Iteration_hits> |
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47 </Iteration_hits> |
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48 <Iteration_stat> |
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49 <Statistics> |
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50 <Statistics_db-num>0</Statistics_db-num> |
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51 <Statistics_db-len>0</Statistics_db-len> |
21
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52 <Statistics_hsp-len>31</Statistics_hsp-len> |
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53 <Statistics_eff-space>3667980</Statistics_eff-space> |
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54 <Statistics_kappa>0.071</Statistics_kappa> |
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55 <Statistics_lambda>0.299</Statistics_lambda> |
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56 <Statistics_entropy>0.27</Statistics_entropy> |
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57 </Statistics> |
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58 </Iteration_stat> |
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59 <Iteration_message>No hits found</Iteration_message> |
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60 </Iteration> |
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61 <Iteration> |
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62 <Iteration_iter-num>3</Iteration_iter-num> |
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63 <Iteration_query-ID>Query_3</Iteration_query-ID> |
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64 <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> |
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65 <Iteration_query-len>1382</Iteration_query-len> |
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66 <Iteration_hits> |
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67 </Iteration_hits> |
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68 <Iteration_stat> |
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69 <Statistics> |
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70 <Statistics_db-num>0</Statistics_db-num> |
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71 <Statistics_db-len>0</Statistics_db-len> |
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72 <Statistics_hsp-len>32</Statistics_hsp-len> |
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73 <Statistics_eff-space>4374000</Statistics_eff-space> |
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74 <Statistics_kappa>0.071</Statistics_kappa> |
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75 <Statistics_lambda>0.299</Statistics_lambda> |
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76 <Statistics_entropy>0.27</Statistics_entropy> |
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77 </Statistics> |
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78 </Iteration_stat> |
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79 <Iteration_message>No hits found</Iteration_message> |
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80 </Iteration> |
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81 <Iteration> |
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82 <Iteration_iter-num>4</Iteration_iter-num> |
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83 <Iteration_query-ID>Query_4</Iteration_query-ID> |
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84 <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> |
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85 <Iteration_query-len>348</Iteration_query-len> |
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86 <Iteration_hits> |
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87 <Hit> |
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88 <Hit_num>1</Hit_num> |
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89 <Hit_id>gi|57163782|ref|NM_001009242.1|</Hit_id> |
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90 <Hit_def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Hit_def> |
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91 <Hit_accession>Subject_1</Hit_accession> |
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92 <Hit_len>1047</Hit_len> |
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93 <Hit_hsps> |
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94 <Hsp> |
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95 <Hsp_num>1</Hsp_num> |
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96 <Hsp_bit-score>732.393</Hsp_bit-score> |
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97 <Hsp_score>1689</Hsp_score> |
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98 <Hsp_evalue>0</Hsp_evalue> |
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99 <Hsp_query-from>1</Hsp_query-from> |
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100 <Hsp_query-to>348</Hsp_query-to> |
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101 <Hsp_hit-from>1</Hsp_hit-from> |
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102 <Hsp_hit-to>1044</Hsp_hit-to> |
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103 <Hsp_query-frame>0</Hsp_query-frame> |
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104 <Hsp_hit-frame>1</Hsp_hit-frame> |
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105 <Hsp_identity>336</Hsp_identity> |
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106 <Hsp_positive>343</Hsp_positive> |
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107 <Hsp_gaps>0</Hsp_gaps> |
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108 <Hsp_align-len>348</Hsp_align-len> |
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109 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq> |
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110 <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_hseq> |
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111 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline> |
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112 </Hsp> |
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113 </Hit_hsps> |
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114 </Hit> |
21
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115 <Hit> |
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116 <Hit_num>2</Hit_num> |
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117 <Hit_id>gi|18148870|dbj|AB062417.1|</Hit_id> |
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118 <Hit_def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Hit_def> |
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119 <Hit_accession>Subject_5</Hit_accession> |
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120 <Hit_len>1047</Hit_len> |
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121 <Hit_hsps> |
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122 <Hsp> |
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123 <Hsp_num>1</Hsp_num> |
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124 <Hsp_bit-score>711.256</Hsp_bit-score> |
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125 <Hsp_score>1640</Hsp_score> |
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126 <Hsp_evalue>0</Hsp_evalue> |
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127 <Hsp_query-from>1</Hsp_query-from> |
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128 <Hsp_query-to>348</Hsp_query-to> |
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129 <Hsp_hit-from>1</Hsp_hit-from> |
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130 <Hsp_hit-to>1044</Hsp_hit-to> |
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131 <Hsp_query-frame>0</Hsp_query-frame> |
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132 <Hsp_hit-frame>1</Hsp_hit-frame> |
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133 <Hsp_identity>325</Hsp_identity> |
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134 <Hsp_positive>337</Hsp_positive> |
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135 <Hsp_gaps>0</Hsp_gaps> |
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136 <Hsp_align-len>348</Hsp_align-len> |
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137 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq> |
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138 <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_hseq> |
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139 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline> |
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140 </Hsp> |
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141 </Hit_hsps> |
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142 </Hit> |
11
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143 <Hit> |
21
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144 <Hit_num>3</Hit_num> |
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145 <Hit_id>gi|283855822|gb|GQ290312.1|</Hit_id> |
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146 <Hit_def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Hit_def> |
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147 <Hit_accession>Subject_4</Hit_accession> |
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148 <Hit_len>983</Hit_len> |
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149 <Hit_hsps> |
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150 <Hsp> |
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151 <Hsp_num>1</Hsp_num> |
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152 <Hsp_bit-score>658.198</Hsp_bit-score> |
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153 <Hsp_score>1517</Hsp_score> |
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154 <Hsp_evalue>0</Hsp_evalue> |
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155 <Hsp_query-from>11</Hsp_query-from> |
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156 <Hsp_query-to>336</Hsp_query-to> |
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157 <Hsp_hit-from>1</Hsp_hit-from> |
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158 <Hsp_hit-to>978</Hsp_hit-to> |
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159 <Hsp_query-frame>0</Hsp_query-frame> |
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160 <Hsp_hit-frame>1</Hsp_hit-frame> |
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161 <Hsp_identity>310</Hsp_identity> |
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162 <Hsp_positive>322</Hsp_positive> |
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163 <Hsp_gaps>0</Hsp_gaps> |
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164 <Hsp_align-len>326</Hsp_align-len> |
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165 <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT</Hsp_qseq> |
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166 <Hsp_hseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT</Hsp_hseq> |
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167 <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T</Hsp_midline> |
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168 </Hsp> |
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169 </Hit_hsps> |
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170 </Hit> |
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171 <Hit> |
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172 <Hit_num>4</Hit_num> |
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173 <Hit_id>gi|2734705|gb|U59921.1|BBU59921</Hit_id> |
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174 <Hit_def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Hit_def> |
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175 <Hit_accession>Subject_2</Hit_accession> |
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176 <Hit_len>1574</Hit_len> |
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177 <Hit_hsps> |
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178 <Hsp> |
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179 <Hsp_num>1</Hsp_num> |
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180 <Hsp_bit-score>646.12</Hsp_bit-score> |
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181 <Hsp_score>1489</Hsp_score> |
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182 <Hsp_evalue>0</Hsp_evalue> |
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183 <Hsp_query-from>1</Hsp_query-from> |
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184 <Hsp_query-to>341</Hsp_query-to> |
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185 <Hsp_hit-from>42</Hsp_hit-from> |
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186 <Hsp_hit-to>1067</Hsp_hit-to> |
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187 <Hsp_query-frame>0</Hsp_query-frame> |
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188 <Hsp_hit-frame>3</Hsp_hit-frame> |
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189 <Hsp_identity>290</Hsp_identity> |
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190 <Hsp_positive>320</Hsp_positive> |
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191 <Hsp_gaps>1</Hsp_gaps> |
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192 <Hsp_align-len>342</Hsp_align-len> |
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193 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE</Hsp_qseq> |
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194 <Hsp_hseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE</Hsp_hseq> |
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195 <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S+ GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF+ QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE</Hsp_midline> |
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196 </Hsp> |
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197 </Hit_hsps> |
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198 </Hit> |
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199 <Hit> |
21
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200 <Hit_num>5</Hit_num> |
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201 <Hit_id>gi|12583664|dbj|AB043817.1|</Hit_id> |
11
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202 <Hit_def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Hit_def> |
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203 <Hit_accession>Subject_6</Hit_accession> |
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204 <Hit_len>1344</Hit_len> |
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205 <Hit_hsps> |
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206 <Hsp> |
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207 <Hsp_num>1</Hsp_num> |
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208 <Hsp_bit-score>626.708</Hsp_bit-score> |
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209 <Hsp_score>1444</Hsp_score> |
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210 <Hsp_evalue>0</Hsp_evalue> |
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211 <Hsp_query-from>1</Hsp_query-from> |
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212 <Hsp_query-to>341</Hsp_query-to> |
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213 <Hsp_hit-from>23</Hsp_hit-from> |
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214 <Hsp_hit-to>1048</Hsp_hit-to> |
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215 <Hsp_query-frame>0</Hsp_query-frame> |
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216 <Hsp_hit-frame>2</Hsp_hit-frame> |
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217 <Hsp_identity>281</Hsp_identity> |
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218 <Hsp_positive>311</Hsp_positive> |
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219 <Hsp_gaps>1</Hsp_gaps> |
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220 <Hsp_align-len>342</Hsp_align-len> |
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221 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE</Hsp_qseq> |
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222 <Hsp_hseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE</Hsp_hseq> |
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223 <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR CM+TT+CCGKNP +D ASAT SKTE</Hsp_midline> |
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224 </Hsp> |
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225 </Hit_hsps> |
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226 </Hit> |
21
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227 <Hit> |
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228 <Hit_num>6</Hit_num> |
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229 <Hit_id>gi|283855845|gb|GQ290303.1|</Hit_id> |
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230 <Hit_def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Hit_def> |
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231 <Hit_accession>Subject_3</Hit_accession> |
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232 <Hit_len>4301</Hit_len> |
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233 <Hit_hsps> |
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234 <Hsp> |
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235 <Hsp_num>1</Hsp_num> |
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236 <Hsp_bit-score>151.343</Hsp_bit-score> |
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237 <Hsp_score>342</Hsp_score> |
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238 <Hsp_evalue>1.34146e-71</Hsp_evalue> |
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239 <Hsp_query-from>239</Hsp_query-from> |
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240 <Hsp_query-to>312</Hsp_query-to> |
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241 <Hsp_hit-from>3147</Hsp_hit-from> |
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242 <Hsp_hit-to>3368</Hsp_hit-to> |
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243 <Hsp_query-frame>0</Hsp_query-frame> |
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244 <Hsp_hit-frame>3</Hsp_hit-frame> |
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245 <Hsp_identity>69</Hsp_identity> |
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246 <Hsp_positive>73</Hsp_positive> |
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247 <Hsp_gaps>0</Hsp_gaps> |
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248 <Hsp_align-len>74</Hsp_align-len> |
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249 <Hsp_qseq>ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_qseq> |
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250 <Hsp_hseq>ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_hseq> |
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251 <Hsp_midline>ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline> |
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252 </Hsp> |
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253 <Hsp> |
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254 <Hsp_num>2</Hsp_num> |
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255 <Hsp_bit-score>126.324</Hsp_bit-score> |
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256 <Hsp_score>284</Hsp_score> |
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257 <Hsp_evalue>1.34146e-71</Hsp_evalue> |
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258 <Hsp_query-from>177</Hsp_query-from> |
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259 <Hsp_query-to>235</Hsp_query-to> |
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260 <Hsp_hit-from>2855</Hsp_hit-from> |
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261 <Hsp_hit-to>3031</Hsp_hit-to> |
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262 <Hsp_query-frame>0</Hsp_query-frame> |
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263 <Hsp_hit-frame>2</Hsp_hit-frame> |
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264 <Hsp_identity>54</Hsp_identity> |
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265 <Hsp_positive>57</Hsp_positive> |
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266 <Hsp_gaps>0</Hsp_gaps> |
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267 <Hsp_align-len>59</Hsp_align-len> |
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268 <Hsp_qseq>RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA</Hsp_qseq> |
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269 <Hsp_hseq>RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS</Hsp_hseq> |
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270 <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +</Hsp_midline> |
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271 </Hsp> |
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272 <Hsp> |
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273 <Hsp_num>3</Hsp_num> |
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274 <Hsp_bit-score>229.42</Hsp_bit-score> |
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275 <Hsp_score>523</Hsp_score> |
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276 <Hsp_evalue>3.3088e-67</Hsp_evalue> |
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277 <Hsp_query-from>11</Hsp_query-from> |
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278 <Hsp_query-to>121</Hsp_query-to> |
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279 <Hsp_hit-from>1</Hsp_hit-from> |
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280 <Hsp_hit-to>333</Hsp_hit-to> |
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281 <Hsp_query-frame>0</Hsp_query-frame> |
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282 <Hsp_hit-frame>1</Hsp_hit-frame> |
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283 <Hsp_identity>107</Hsp_identity> |
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284 <Hsp_positive>109</Hsp_positive> |
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285 <Hsp_gaps>0</Hsp_gaps> |
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286 <Hsp_align-len>111</Hsp_align-len> |
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287 <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_qseq> |
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288 <Hsp_hseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq> |
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289 <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline> |
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290 </Hsp> |
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291 <Hsp> |
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292 <Hsp_num>4</Hsp_num> |
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293 <Hsp_bit-score>122.873</Hsp_bit-score> |
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294 <Hsp_score>276</Hsp_score> |
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295 <Hsp_evalue>2.31174e-32</Hsp_evalue> |
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296 <Hsp_query-from>119</Hsp_query-from> |
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297 <Hsp_query-to>177</Hsp_query-to> |
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298 <Hsp_hit-from>1404</Hsp_hit-from> |
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299 <Hsp_hit-to>1580</Hsp_hit-to> |
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300 <Hsp_query-frame>0</Hsp_query-frame> |
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301 <Hsp_hit-frame>3</Hsp_hit-frame> |
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302 <Hsp_identity>55</Hsp_identity> |
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303 <Hsp_positive>56</Hsp_positive> |
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304 <Hsp_gaps>0</Hsp_gaps> |
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305 <Hsp_align-len>59</Hsp_align-len> |
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306 <Hsp_qseq>LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR</Hsp_qseq> |
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307 <Hsp_hseq>LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR</Hsp_hseq> |
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308 <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline> |
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309 </Hsp> |
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310 <Hsp> |
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311 <Hsp_num>5</Hsp_num> |
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312 <Hsp_bit-score>57.7368</Hsp_bit-score> |
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313 <Hsp_score>125</Hsp_score> |
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314 <Hsp_evalue>3.61181e-12</Hsp_evalue> |
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315 <Hsp_query-from>312</Hsp_query-from> |
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316 <Hsp_query-to>337</Hsp_query-to> |
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317 <Hsp_hit-from>4222</Hsp_hit-from> |
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318 <Hsp_hit-to>4299</Hsp_hit-to> |
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319 <Hsp_query-frame>0</Hsp_query-frame> |
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320 <Hsp_hit-frame>1</Hsp_hit-frame> |
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321 <Hsp_identity>23</Hsp_identity> |
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322 <Hsp_positive>24</Hsp_positive> |
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323 <Hsp_gaps>0</Hsp_gaps> |
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324 <Hsp_align-len>26</Hsp_align-len> |
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325 <Hsp_qseq>QFRNCMLTTICCGKNPLGDDEASATV</Hsp_qseq> |
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326 <Hsp_hseq>QFRNCMLTTLCCGKNPLGDDEASTTA</Hsp_hseq> |
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327 <Hsp_midline>QFRNCMLTT+CCGKNPLGDDEAS T </Hsp_midline> |
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328 </Hsp> |
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329 </Hit_hsps> |
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330 </Hit> |
11
4c4a0da938ff
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331 </Iteration_hits> |
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332 <Iteration_stat> |
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333 <Statistics> |
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334 <Statistics_db-num>0</Statistics_db-num> |
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335 <Statistics_db-len>0</Statistics_db-len> |
21
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336 <Statistics_hsp-len>27</Statistics_hsp-len> |
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337 <Statistics_eff-space>1049670</Statistics_eff-space> |
11
4c4a0da938ff
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338 <Statistics_kappa>0.071</Statistics_kappa> |
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339 <Statistics_lambda>0.299</Statistics_lambda> |
4c4a0da938ff
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340 <Statistics_entropy>0.27</Statistics_entropy> |
4c4a0da938ff
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341 </Statistics> |
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342 </Iteration_stat> |
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343 </Iteration> |
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344 </BlastOutput_iterations> |
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345 </BlastOutput> |
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346 |