Mercurial > repos > devteam > ncbi_blast_plus
annotate test-data/tblastn_four_human_vs_rhodopsin.html @ 20:3034ce97dd33 draft
Uploaded v0.1.08, can search multiple local databases, fixes a pipe problem in blastdbcmd, and minor internal changes.
| author | peterjc |
|---|---|
| date | Mon, 07 Nov 2016 11:31:37 -0500 |
| parents | 577d9c12411a |
| children | 7538e2bfcd41 |
| rev | line source |
|---|---|
| 0 | 1 <HTML> |
| 2 <TITLE>BLAST Search Results</TITLE> | |
| 3 <BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099"> | |
| 4 <PRE> | |
| 5 | |
| 18 | 6 <b>TBLASTN 2.2.31+</b> |
| 0 | 7 |
| 8 | |
| 9 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 | |
| 10 OS=Homo sapiens GN=ERP44 PE=1 SV=1 | |
| 11 | |
| 12 Length=406 | |
| 13 | |
| 14 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA | |
| 15 | |
| 16 Length=1047 | |
| 17 | |
| 18 | |
| 19 ***** No hits found ***** | |
| 20 | |
| 21 | |
| 22 | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
23 Lambda K H a alpha |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
24 0.347 0.182 0.684 0.522 1.92 |
| 0 | 25 |
| 26 Gapped | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
27 Lambda K H a alpha sigma |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
28 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 29 |
| 30 Effective search space used: 127710 | |
| 31 | |
| 32 | |
| 33 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 | |
| 34 OS=Homo sapiens GN=ERP44 PE=1 SV=1 | |
| 35 | |
| 36 Length=406 | |
| 37 | |
| 38 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete | |
| 39 cds | |
| 40 | |
| 41 Length=1574 | |
| 42 | |
| 43 | |
| 44 ***** No hits found ***** | |
| 45 | |
| 46 | |
| 47 | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
48 Lambda K H a alpha |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
49 0.347 0.182 0.684 0.522 1.92 |
| 0 | 50 |
| 51 Gapped | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
52 Lambda K H a alpha sigma |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
53 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 54 |
| 55 Effective search space used: 127710 | |
| 56 | |
| 57 | |
| 58 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 | |
| 59 OS=Homo sapiens GN=ERP44 PE=1 SV=1 | |
| 60 | |
| 61 Length=406 | |
| 62 | |
| 63 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 | |
| 64 rhodopsin (RHO) gene, exons 1 through 5 and partial cds | |
| 65 | |
| 66 Length=4301 | |
| 67 | |
| 68 | |
| 69 ***** No hits found ***** | |
| 70 | |
| 71 | |
| 72 | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
73 Lambda K H a alpha |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
74 0.347 0.182 0.684 0.522 1.92 |
| 0 | 75 |
| 76 Gapped | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
77 Lambda K H a alpha sigma |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
78 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 79 |
| 80 Effective search space used: 127710 | |
| 81 | |
| 82 | |
| 83 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 | |
| 84 OS=Homo sapiens GN=ERP44 PE=1 SV=1 | |
| 85 | |
| 86 Length=406 | |
| 87 | |
| 88 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin | |
| 89 (RHO) mRNA, partial cds | |
| 90 | |
| 91 Length=983 | |
| 92 | |
| 93 | |
| 94 ***** No hits found ***** | |
| 95 | |
| 96 | |
| 97 | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
98 Lambda K H a alpha |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
99 0.347 0.182 0.684 0.522 1.92 |
| 0 | 100 |
| 101 Gapped | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
102 Lambda K H a alpha sigma |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
103 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 104 |
| 105 Effective search space used: 127710 | |
| 106 | |
| 107 | |
| 108 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 | |
| 109 OS=Homo sapiens GN=ERP44 PE=1 SV=1 | |
| 110 | |
| 111 Length=406 | |
| 112 | |
| 113 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for | |
| 114 rhodopsin, complete cds | |
| 115 | |
| 116 Length=1047 | |
| 117 | |
| 118 | |
| 119 ***** No hits found ***** | |
| 120 | |
| 121 | |
| 122 | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
123 Lambda K H a alpha |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
124 0.347 0.182 0.684 0.522 1.92 |
| 0 | 125 |
| 126 Gapped | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
127 Lambda K H a alpha sigma |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
128 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 129 |
| 130 Effective search space used: 127710 | |
| 131 | |
| 132 | |
| 133 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 | |
| 134 OS=Homo sapiens GN=ERP44 PE=1 SV=1 | |
| 135 | |
| 136 Length=406 | |
| 137 | |
| 138 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh | |
| 139 water form rod opsin, complete cds | |
| 140 | |
| 141 Length=1344 | |
| 142 | |
| 143 | |
| 144 ***** No hits found ***** | |
| 145 | |
| 146 | |
| 147 | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
148 Lambda K H a alpha |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
149 0.347 0.182 0.684 0.522 1.92 |
| 0 | 150 |
| 151 Gapped | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
152 Lambda K H a alpha sigma |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
153 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 154 |
| 155 Effective search space used: 127710 | |
| 156 | |
| 157 | |
| 158 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens | |
| 159 GN=BMP2K PE=1 SV=2 | |
| 160 | |
| 161 Length=1161 | |
| 162 | |
| 163 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA | |
| 164 | |
| 165 Length=1047 | |
| 166 | |
| 167 | |
| 168 ***** No hits found ***** | |
| 169 | |
| 170 | |
| 171 | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
172 Lambda K H a alpha |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
173 0.334 0.170 0.615 0.522 1.92 |
| 0 | 174 |
| 175 Gapped | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
176 Lambda K H a alpha sigma |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
177 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 178 |
| 179 Effective search space used: 370988 | |
| 180 | |
| 181 | |
| 182 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens | |
| 183 GN=BMP2K PE=1 SV=2 | |
| 184 | |
| 185 Length=1161 | |
| 186 | |
| 187 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete | |
| 188 cds | |
| 189 | |
| 190 Length=1574 | |
| 191 | |
| 192 | |
| 193 ***** No hits found ***** | |
| 194 | |
| 195 | |
| 196 | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
197 Lambda K H a alpha |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
198 0.334 0.170 0.615 0.522 1.92 |
| 0 | 199 |
| 200 Gapped | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
201 Lambda K H a alpha sigma |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
202 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 203 |
| 204 Effective search space used: 370988 | |
| 205 | |
| 206 | |
| 207 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens | |
| 208 GN=BMP2K PE=1 SV=2 | |
| 209 | |
| 210 Length=1161 | |
| 211 | |
| 212 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 | |
| 213 rhodopsin (RHO) gene, exons 1 through 5 and partial cds | |
| 214 | |
| 215 Length=4301 | |
| 216 | |
| 217 | |
| 218 ***** No hits found ***** | |
| 219 | |
| 220 | |
| 221 | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
222 Lambda K H a alpha |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
223 0.334 0.170 0.615 0.522 1.92 |
| 0 | 224 |
| 225 Gapped | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
226 Lambda K H a alpha sigma |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
227 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 228 |
| 229 Effective search space used: 370988 | |
| 230 | |
| 231 | |
| 232 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens | |
| 233 GN=BMP2K PE=1 SV=2 | |
| 234 | |
| 235 Length=1161 | |
| 236 | |
| 237 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin | |
| 238 (RHO) mRNA, partial cds | |
| 239 | |
| 240 Length=983 | |
| 241 | |
| 242 | |
| 243 ***** No hits found ***** | |
| 244 | |
| 245 | |
| 246 | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
247 Lambda K H a alpha |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
248 0.334 0.170 0.615 0.522 1.92 |
| 0 | 249 |
| 250 Gapped | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
251 Lambda K H a alpha sigma |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
252 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 253 |
| 254 Effective search space used: 370988 | |
| 255 | |
| 256 | |
| 257 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens | |
| 258 GN=BMP2K PE=1 SV=2 | |
| 259 | |
| 260 Length=1161 | |
| 261 | |
| 262 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for | |
| 263 rhodopsin, complete cds | |
| 264 | |
| 265 Length=1047 | |
| 266 | |
| 267 | |
| 268 ***** No hits found ***** | |
| 269 | |
| 270 | |
| 271 | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
272 Lambda K H a alpha |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
273 0.334 0.170 0.615 0.522 1.92 |
| 0 | 274 |
| 275 Gapped | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
276 Lambda K H a alpha sigma |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
277 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 278 |
| 279 Effective search space used: 370988 | |
| 280 | |
| 281 | |
| 282 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens | |
| 283 GN=BMP2K PE=1 SV=2 | |
| 284 | |
| 285 Length=1161 | |
| 286 | |
| 287 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh | |
| 288 water form rod opsin, complete cds | |
| 289 | |
| 290 Length=1344 | |
| 291 | |
| 292 | |
| 293 ***** No hits found ***** | |
| 294 | |
| 295 | |
| 296 | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
297 Lambda K H a alpha |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
298 0.334 0.170 0.615 0.522 1.92 |
| 0 | 299 |
| 300 Gapped | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
301 Lambda K H a alpha sigma |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
302 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 303 |
| 304 Effective search space used: 370988 | |
| 305 | |
| 306 | |
| 307 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 | |
| 308 SV=4 | |
| 309 | |
| 310 Length=1382 | |
| 311 | |
| 312 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA | |
| 313 | |
| 314 Length=1047 | |
| 315 | |
| 316 | |
| 317 ***** No hits found ***** | |
| 318 | |
| 319 | |
| 320 | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
321 Lambda K H a alpha |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
322 0.346 0.180 0.700 0.522 1.92 |
| 0 | 323 |
| 324 Gapped | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
325 Lambda K H a alpha sigma |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
326 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 327 |
| 328 Effective search space used: 441350 | |
| 329 | |
| 330 | |
| 331 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 | |
| 332 SV=4 | |
| 333 | |
| 334 Length=1382 | |
| 335 | |
| 336 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete | |
| 337 cds | |
| 338 | |
| 339 Length=1574 | |
| 340 | |
| 341 | |
| 342 ***** No hits found ***** | |
| 343 | |
| 344 | |
| 345 | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
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diff
changeset
|
346 Lambda K H a alpha |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
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|
347 0.346 0.180 0.700 0.522 1.92 |
| 0 | 348 |
| 349 Gapped | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
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changeset
|
350 Lambda K H a alpha sigma |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
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|
351 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 352 |
| 353 Effective search space used: 441350 | |
| 354 | |
| 355 | |
| 356 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 | |
| 357 SV=4 | |
| 358 | |
| 359 Length=1382 | |
| 360 | |
| 361 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 | |
| 362 rhodopsin (RHO) gene, exons 1 through 5 and partial cds | |
| 363 | |
| 364 Length=4301 | |
| 365 | |
| 366 | |
| 367 ***** No hits found ***** | |
| 368 | |
| 369 | |
| 370 | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
371 Lambda K H a alpha |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
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diff
changeset
|
372 0.346 0.180 0.700 0.522 1.92 |
| 0 | 373 |
| 374 Gapped | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
375 Lambda K H a alpha sigma |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
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changeset
|
376 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 377 |
| 378 Effective search space used: 441350 | |
| 379 | |
| 380 | |
| 381 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 | |
| 382 SV=4 | |
| 383 | |
| 384 Length=1382 | |
| 385 | |
| 386 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin | |
| 387 (RHO) mRNA, partial cds | |
| 388 | |
| 389 Length=983 | |
| 390 | |
| 391 | |
| 392 ***** No hits found ***** | |
| 393 | |
| 394 | |
| 395 | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
396 Lambda K H a alpha |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
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diff
changeset
|
397 0.346 0.180 0.700 0.522 1.92 |
| 0 | 398 |
| 399 Gapped | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
400 Lambda K H a alpha sigma |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
401 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 402 |
| 403 Effective search space used: 441350 | |
| 404 | |
| 405 | |
| 406 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 | |
| 407 SV=4 | |
| 408 | |
| 409 Length=1382 | |
| 410 | |
| 411 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for | |
| 412 rhodopsin, complete cds | |
| 413 | |
| 414 Length=1047 | |
| 415 | |
| 416 | |
| 417 ***** No hits found ***** | |
| 418 | |
| 419 | |
| 420 | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
421 Lambda K H a alpha |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
422 0.346 0.180 0.700 0.522 1.92 |
| 0 | 423 |
| 424 Gapped | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
425 Lambda K H a alpha sigma |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
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diff
changeset
|
426 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 427 |
| 428 Effective search space used: 441350 | |
| 429 | |
| 430 | |
| 431 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 | |
| 432 SV=4 | |
| 433 | |
| 434 Length=1382 | |
| 435 | |
| 436 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh | |
| 437 water form rod opsin, complete cds | |
| 438 | |
| 439 Length=1344 | |
| 440 | |
| 441 | |
| 442 ***** No hits found ***** | |
| 443 | |
| 444 | |
| 445 | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
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diff
changeset
|
446 Lambda K H a alpha |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
447 0.346 0.180 0.700 0.522 1.92 |
| 0 | 448 |
| 449 Gapped | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
450 Lambda K H a alpha sigma |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
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diff
changeset
|
451 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 452 |
| 453 Effective search space used: 441350 | |
| 454 | |
| 455 | |
| 456 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 | |
| 457 | |
| 458 Length=348 | |
| 459 | |
| 460 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA | |
| 461 | |
| 462 Length=1047 | |
| 463 | |
|
13
623f727cdff1
Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
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diff
changeset
|
464 |
| 18 | 465 Score = 732 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. |
| 0 | 466 Identities = 336/348 (97%), Positives = 343/348 (99%), Gaps = 0/348 (0%) |
| 467 Frame = +1 | |
| 468 | |
| 469 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60 | |
| 470 MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY | |
| 471 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 180 | |
| 472 | |
| 473 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120 | |
| 474 VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG | |
| 475 Sbjct 181 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 360 | |
| 476 | |
| 477 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180 | |
| 478 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP | |
| 479 Sbjct 361 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP 540 | |
| 480 | |
| 481 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240 | |
| 482 EG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQES | |
| 483 Sbjct 541 EGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQES 720 | |
| 484 | |
| 485 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300 | |
| 486 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++I | |
| 487 Sbjct 721 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSI 900 | |
| 488 | |
| 489 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 348 | |
| 490 YNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA | |
| 491 Sbjct 901 YNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA 1044 | |
| 492 | |
| 493 | |
| 494 | |
|
11
4c4a0da938ff
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peterjc
parents:
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diff
changeset
|
495 Lambda K H a alpha |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
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changeset
|
496 0.351 0.182 0.707 0.522 1.92 |
| 0 | 497 |
| 498 Gapped | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
499 Lambda K H a alpha sigma |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
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diff
changeset
|
500 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 501 |
| 502 Effective search space used: 109230 | |
| 503 | |
| 504 | |
| 505 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 | |
| 506 | |
| 507 Length=348 | |
| 508 | |
| 509 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete | |
| 510 cds | |
| 511 | |
| 512 Length=1574 | |
| 513 | |
|
13
623f727cdff1
Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
11
diff
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|
514 |
| 18 | 515 Score = 646 bits (1489), Expect = 0.0, Method: Compositional matrix adjust. |
| 0 | 516 Identities = 290/342 (85%), Positives = 320/342 (94%), Gaps = 1/342 (0%) |
| 517 Frame = +3 | |
| 518 | |
| 519 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60 | |
| 520 MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLY | |
| 521 Sbjct 42 MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLY 221 | |
| 522 | |
| 523 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120 | |
| 524 VT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S+ GYF+ G TGC +EGFFATLG | |
| 525 Sbjct 222 VTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLG 401 | |
| 526 | |
| 527 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180 | |
| 528 GEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIP | |
| 529 Sbjct 402 GEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIP 581 | |
| 530 | |
| 531 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240 | |
| 532 EG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQES | |
| 533 Sbjct 582 EGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQES 761 | |
| 534 | |
| 535 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300 | |
| 536 ATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF+ QGS FGPIFMT+PAFFAKS++I | |
| 537 Sbjct 762 ATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSI 941 | |
| 538 | |
| 539 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE 341 | |
| 540 YNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE | |
| 541 Sbjct 942 YNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE 1067 | |
| 542 | |
| 543 | |
| 544 | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
545 Lambda K H a alpha |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
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diff
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|
546 0.351 0.182 0.707 0.522 1.92 |
| 0 | 547 |
| 548 Gapped | |
|
11
4c4a0da938ff
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peterjc
parents:
8
diff
changeset
|
549 Lambda K H a alpha sigma |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
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|
550 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 551 |
| 552 Effective search space used: 109230 | |
| 553 | |
| 554 | |
| 555 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 | |
| 556 | |
| 557 Length=348 | |
| 558 | |
| 559 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 | |
| 560 rhodopsin (RHO) gene, exons 1 through 5 and partial cds | |
| 561 | |
| 562 Length=4301 | |
| 563 | |
|
13
623f727cdff1
Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
11
diff
changeset
|
564 |
| 18 | 565 Score = 151 bits (342), Expect(2) = 1e-72, Method: Compositional matrix adjust. |
|
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
566 Identities = 69/74 (93%), Positives = 73/74 (99%), Gaps = 0/74 (0%) |
| 0 | 567 Frame = +3 |
| 568 | |
| 569 Query 239 ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSA 298 | |
| 570 ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS+ | |
| 571 Sbjct 3147 ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSS 3326 | |
| 572 | |
| 573 Query 299 AIYNPVIYIMMNKQ 312 | |
| 574 +IYNPVIYIMMNKQ | |
| 575 Sbjct 3327 SIYNPVIYIMMNKQ 3368 | |
| 576 | |
| 577 | |
| 18 | 578 Score = 126 bits (284), Expect(2) = 1e-72, Method: Compositional matrix adjust. |
| 0 | 579 Identities = 54/59 (92%), Positives = 57/59 (97%), Gaps = 0/59 (0%) |
| 580 Frame = +2 | |
| 581 | |
| 582 Query 177 RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA 235 | |
| 583 RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE + | |
| 584 Sbjct 2855 RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS 3031 | |
| 585 | |
| 586 | |
| 18 | 587 Score = 229 bits (523), Expect = 9e-67, Method: Compositional matrix adjust. |
|
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
588 Identities = 107/111 (96%), Positives = 109/111 (98%), Gaps = 0/111 (0%) |
| 0 | 589 Frame = +1 |
| 590 | |
| 591 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70 | |
| 592 VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT | |
| 593 Sbjct 1 VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180 | |
| 594 | |
| 595 Query 71 PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG 121 | |
| 596 PLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG | |
| 597 Sbjct 181 PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 333 | |
| 598 | |
| 599 | |
| 18 | 600 Score = 122 bits (276), Expect = 1e-32, Method: Compositional matrix adjust. |
|
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
601 Identities = 55/59 (93%), Positives = 56/59 (95%), Gaps = 0/59 (0%) |
| 0 | 602 Frame = +3 |
| 603 | |
| 604 Query 119 LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR 177 | |
| 605 L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR | |
| 606 Sbjct 1404 LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR 1580 | |
| 607 | |
| 608 | |
|
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
609 Score = 57.7 bits (125), Expect = 2e-12, Method: Compositional matrix adjust. |
|
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
610 Identities = 23/26 (88%), Positives = 24/26 (92%), Gaps = 0/26 (0%) |
| 0 | 611 Frame = +1 |
| 612 | |
| 613 Query 312 QFRNCMLTTICCGKNPLGDDEASATV 337 | |
| 614 QFRNCMLTT+CCGKNPLGDDEAS T | |
| 615 Sbjct 4222 QFRNCMLTTLCCGKNPLGDDEASTTA 4299 | |
| 616 | |
| 617 | |
| 618 | |
|
11
4c4a0da938ff
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peterjc
parents:
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diff
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|
619 Lambda K H a alpha |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
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|
620 0.351 0.182 0.707 0.522 1.92 |
| 0 | 621 |
| 622 Gapped | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
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|
623 Lambda K H a alpha sigma |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
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|
624 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 625 |
| 626 Effective search space used: 109230 | |
| 627 | |
| 628 | |
| 629 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 | |
| 630 | |
| 631 Length=348 | |
| 632 | |
| 633 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin | |
| 634 (RHO) mRNA, partial cds | |
| 635 | |
| 636 Length=983 | |
| 637 | |
|
13
623f727cdff1
Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
11
diff
changeset
|
638 |
| 18 | 639 Score = 658 bits (1517), Expect = 0.0, Method: Compositional matrix adjust. |
|
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
640 Identities = 310/326 (95%), Positives = 322/326 (99%), Gaps = 0/326 (0%) |
| 0 | 641 Frame = +1 |
| 642 | |
| 643 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70 | |
| 644 VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT | |
| 645 Sbjct 1 VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180 | |
| 646 | |
| 647 Query 71 PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVV 130 | |
| 648 PLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVV | |
| 649 Sbjct 181 PLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVV 360 | |
| 650 | |
| 651 Query 131 LAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGID 190 | |
| 652 LAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGID | |
| 653 Sbjct 361 LAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGID 540 | |
| 654 | |
| 655 Query 191 YYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV 250 | |
| 656 YYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEV | |
| 657 Sbjct 541 YYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV 720 | |
| 658 | |
| 659 Query 251 TRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMN 310 | |
| 660 TRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMN | |
| 661 Sbjct 721 TRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMN 900 | |
| 662 | |
| 663 Query 311 KQFRNCMLTTICCGKNPLGDDEASAT 336 | |
| 664 KQFRNCMLTT+CCGKNPLGDDEAS T | |
| 665 Sbjct 901 KQFRNCMLTTLCCGKNPLGDDEASTT 978 | |
| 666 | |
| 667 | |
| 668 | |
|
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4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
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diff
changeset
|
669 Lambda K H a alpha |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
670 0.351 0.182 0.707 0.522 1.92 |
| 0 | 671 |
| 672 Gapped | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
673 Lambda K H a alpha sigma |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
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|
674 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 675 |
| 676 Effective search space used: 109230 | |
| 677 | |
| 678 | |
| 679 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 | |
| 680 | |
| 681 Length=348 | |
| 682 | |
| 683 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for | |
| 684 rhodopsin, complete cds | |
| 685 | |
| 686 Length=1047 | |
| 687 | |
|
13
623f727cdff1
Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
11
diff
changeset
|
688 |
| 18 | 689 Score = 711 bits (1640), Expect = 0.0, Method: Compositional matrix adjust. |
|
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
690 Identities = 325/348 (93%), Positives = 337/348 (97%), Gaps = 0/348 (0%) |
| 0 | 691 Frame = +1 |
| 692 | |
| 693 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60 | |
| 694 MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLY | |
| 695 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLY 180 | |
| 696 | |
| 697 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120 | |
| 698 VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG | |
| 699 Sbjct 181 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 360 | |
| 700 | |
| 701 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180 | |
| 702 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP | |
| 703 Sbjct 361 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP 540 | |
| 704 | |
| 705 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240 | |
| 706 EG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQES | |
| 707 Sbjct 541 EGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES 720 | |
| 708 | |
| 709 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300 | |
| 710 ATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+ | |
| 711 Sbjct 721 ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAV 900 | |
| 712 | |
| 713 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 348 | |
| 714 YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA | |
| 715 Sbjct 901 YNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA 1044 | |
| 716 | |
| 717 | |
| 718 | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
719 Lambda K H a alpha |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
720 0.351 0.182 0.707 0.522 1.92 |
| 0 | 721 |
| 722 Gapped | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
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|
723 Lambda K H a alpha sigma |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
724 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 725 |
| 726 Effective search space used: 109230 | |
| 727 | |
| 728 | |
| 729 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 | |
| 730 | |
| 731 Length=348 | |
| 732 | |
| 733 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh | |
| 734 water form rod opsin, complete cds | |
| 735 | |
| 736 Length=1344 | |
| 737 | |
|
13
623f727cdff1
Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
peterjc
parents:
11
diff
changeset
|
738 |
| 18 | 739 Score = 626 bits (1444), Expect = 0.0, Method: Compositional matrix adjust. |
|
8
1f546099212f
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents:
0
diff
changeset
|
740 Identities = 281/342 (82%), Positives = 311/342 (91%), Gaps = 1/342 (0%) |
| 0 | 741 Frame = +2 |
| 742 | |
| 743 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60 | |
| 744 MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLY | |
| 745 Sbjct 23 MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLY 202 | |
| 746 | |
| 747 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120 | |
| 748 VT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLG | |
| 749 Sbjct 203 VTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLG 382 | |
| 750 | |
| 751 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180 | |
| 752 GEIALW LVVLAIER++VVCKP++NFRFGE HAIMGV TW MALACA PPL GWSRYIP | |
| 753 Sbjct 383 GEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIP 562 | |
| 754 | |
| 755 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240 | |
| 756 EGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES | |
| 757 Sbjct 563 EGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQES 742 | |
| 758 | |
| 759 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300 | |
| 760 TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA YIFTHQGS FGPIFMTIP+FFAKS+A+ | |
| 761 Sbjct 743 ETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSAL 922 | |
| 762 | |
| 763 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE 341 | |
| 764 YNP+IYI MNKQFR CM+TT+CCGKNP +D ASAT SKTE | |
| 765 Sbjct 923 YNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE 1048 | |
| 766 | |
| 767 | |
| 768 | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
769 Lambda K H a alpha |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
770 0.351 0.182 0.707 0.522 1.92 |
| 0 | 771 |
| 772 Gapped | |
|
11
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
773 Lambda K H a alpha sigma |
|
4c4a0da938ff
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents:
8
diff
changeset
|
774 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 775 |
| 776 Effective search space used: 109230 | |
| 777 | |
| 778 | |
| 779 | |
| 780 | |
| 781 Matrix: BLOSUM80 | |
| 782 Gap Penalties: Existence: 10, Extension: 1 | |
| 783 Neighboring words threshold: 14 | |
| 784 Window for multiple hits: 25 | |
| 785 </PRE> | |
| 786 </BODY> | |
| 787 </HTML> |