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1 <HTML>
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2 <TITLE>BLAST Search Results</TITLE>
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3 <BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099">
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4 <PRE>
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5
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6 <b>TBLASTN 2.2.25+</b>
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7
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8
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9 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
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10 OS=Homo sapiens GN=ERP44 PE=1 SV=1
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11
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12 Length=406
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13
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14 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
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15
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16 Length=1047
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17
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18
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19 ***** No hits found *****
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20
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21
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22
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23 Lambda K H
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24 0.347 0.182 0.684
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25
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26 Gapped
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27 Lambda K H
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28 0.299 0.0710 0.270
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29
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30 Effective search space used: 127710
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31
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32
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33 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
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34 OS=Homo sapiens GN=ERP44 PE=1 SV=1
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35
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36 Length=406
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37
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38 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
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39 cds
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40
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41 Length=1574
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42
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43
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44 ***** No hits found *****
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45
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46
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47
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48 Lambda K H
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49 0.347 0.182 0.684
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50
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51 Gapped
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52 Lambda K H
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53 0.299 0.0710 0.270
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54
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55 Effective search space used: 127710
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56
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57
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58 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
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59 OS=Homo sapiens GN=ERP44 PE=1 SV=1
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60
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61 Length=406
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62
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63 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
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64 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
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65
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66 Length=4301
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67
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68
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69 ***** No hits found *****
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70
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71
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72
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73 Lambda K H
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74 0.347 0.182 0.684
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75
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76 Gapped
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77 Lambda K H
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78 0.299 0.0710 0.270
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79
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80 Effective search space used: 127710
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81
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82
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83 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
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84 OS=Homo sapiens GN=ERP44 PE=1 SV=1
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85
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86 Length=406
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87
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88 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
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89 (RHO) mRNA, partial cds
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90
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91 Length=983
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92
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93
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94 ***** No hits found *****
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95
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96
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97
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98 Lambda K H
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99 0.347 0.182 0.684
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100
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101 Gapped
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102 Lambda K H
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103 0.299 0.0710 0.270
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104
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105 Effective search space used: 127710
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106
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107
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108 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
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109 OS=Homo sapiens GN=ERP44 PE=1 SV=1
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110
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111 Length=406
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112
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113 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
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114 rhodopsin, complete cds
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115
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116 Length=1047
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117
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118
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119 ***** No hits found *****
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120
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121
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122
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123 Lambda K H
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124 0.347 0.182 0.684
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125
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126 Gapped
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127 Lambda K H
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128 0.299 0.0710 0.270
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129
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130 Effective search space used: 127710
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131
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132
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133 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
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134 OS=Homo sapiens GN=ERP44 PE=1 SV=1
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135
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136 Length=406
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137
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138 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
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139 water form rod opsin, complete cds
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140
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141 Length=1344
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142
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143
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144 ***** No hits found *****
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145
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146
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147
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148 Lambda K H
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149 0.347 0.182 0.684
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150
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151 Gapped
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152 Lambda K H
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153 0.299 0.0710 0.270
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154
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155 Effective search space used: 127710
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156
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157
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158 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
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159 GN=BMP2K PE=1 SV=2
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160
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161 Length=1161
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162
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163 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
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164
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165 Length=1047
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166
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167
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168 ***** No hits found *****
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169
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170
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171
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172 Lambda K H
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173 0.334 0.170 0.615
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174
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175 Gapped
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176 Lambda K H
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177 0.299 0.0710 0.270
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178
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179 Effective search space used: 370988
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180
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181
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182 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
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183 GN=BMP2K PE=1 SV=2
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184
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185 Length=1161
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186
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187 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
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188 cds
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189
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190 Length=1574
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191
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192
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193 ***** No hits found *****
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194
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195
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196
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197 Lambda K H
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198 0.334 0.170 0.615
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199
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200 Gapped
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201 Lambda K H
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202 0.299 0.0710 0.270
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203
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204 Effective search space used: 370988
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205
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206
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207 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
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208 GN=BMP2K PE=1 SV=2
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209
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210 Length=1161
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211
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212 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
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213 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
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214
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215 Length=4301
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216
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217
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218 ***** No hits found *****
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219
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220
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221
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222 Lambda K H
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223 0.334 0.170 0.615
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224
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225 Gapped
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226 Lambda K H
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227 0.299 0.0710 0.270
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228
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229 Effective search space used: 370988
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230
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231
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232 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
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233 GN=BMP2K PE=1 SV=2
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234
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235 Length=1161
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236
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237 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
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238 (RHO) mRNA, partial cds
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239
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240 Length=983
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241
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242
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243 ***** No hits found *****
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244
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245
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246
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247 Lambda K H
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248 0.334 0.170 0.615
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249
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250 Gapped
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251 Lambda K H
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252 0.299 0.0710 0.270
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253
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254 Effective search space used: 370988
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255
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256
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257 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
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258 GN=BMP2K PE=1 SV=2
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259
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260 Length=1161
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261
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262 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
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263 rhodopsin, complete cds
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264
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265 Length=1047
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266
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267
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268 ***** No hits found *****
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269
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270
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271
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272 Lambda K H
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273 0.334 0.170 0.615
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274
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275 Gapped
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276 Lambda K H
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277 0.299 0.0710 0.270
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278
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279 Effective search space used: 370988
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280
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281
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282 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
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283 GN=BMP2K PE=1 SV=2
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284
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285 Length=1161
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286
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287 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
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288 water form rod opsin, complete cds
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289
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290 Length=1344
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291
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292
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293 ***** No hits found *****
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294
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295
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296
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297 Lambda K H
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298 0.334 0.170 0.615
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299
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300 Gapped
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301 Lambda K H
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302 0.299 0.0710 0.270
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303
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304 Effective search space used: 370988
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305
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306
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307 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
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308 SV=4
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309
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310 Length=1382
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311
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312 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
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313
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314 Length=1047
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315
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316
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317 ***** No hits found *****
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318
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319
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320
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321 Lambda K H
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322 0.346 0.180 0.700
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323
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324 Gapped
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325 Lambda K H
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326 0.299 0.0710 0.270
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327
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328 Effective search space used: 441350
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329
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330
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331 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
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332 SV=4
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333
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334 Length=1382
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335
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336 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
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337 cds
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338
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339 Length=1574
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340
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341
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342 ***** No hits found *****
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343
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344
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345
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346 Lambda K H
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347 0.346 0.180 0.700
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348
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349 Gapped
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350 Lambda K H
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351 0.299 0.0710 0.270
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352
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353 Effective search space used: 441350
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354
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355
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356 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
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357 SV=4
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358
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359 Length=1382
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360
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361 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
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362 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
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363
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364 Length=4301
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365
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366
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367 ***** No hits found *****
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368
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369
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370
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371 Lambda K H
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372 0.346 0.180 0.700
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373
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374 Gapped
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375 Lambda K H
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376 0.299 0.0710 0.270
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377
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378 Effective search space used: 441350
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379
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380
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381 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
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382 SV=4
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383
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384 Length=1382
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385
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386 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
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387 (RHO) mRNA, partial cds
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388
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389 Length=983
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390
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391
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392 ***** No hits found *****
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393
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394
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395
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396 Lambda K H
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397 0.346 0.180 0.700
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398
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399 Gapped
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400 Lambda K H
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401 0.299 0.0710 0.270
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402
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403 Effective search space used: 441350
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404
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405
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406 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
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407 SV=4
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408
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409 Length=1382
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410
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411 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
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412 rhodopsin, complete cds
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413
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414 Length=1047
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415
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416
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417 ***** No hits found *****
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418
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419
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420
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421 Lambda K H
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422 0.346 0.180 0.700
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423
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424 Gapped
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425 Lambda K H
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426 0.299 0.0710 0.270
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427
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428 Effective search space used: 441350
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429
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430
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431 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
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432 SV=4
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433
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434 Length=1382
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435
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436 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
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437 water form rod opsin, complete cds
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438
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439 Length=1344
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440
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441
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442 ***** No hits found *****
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443
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444
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445
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446 Lambda K H
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447 0.346 0.180 0.700
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448
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449 Gapped
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450 Lambda K H
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451 0.299 0.0710 0.270
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452
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453 Effective search space used: 441350
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454
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455
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456 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
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457
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458 Length=348
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459
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460 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
|
|
|
461
|
|
|
462 Length=1047
|
|
|
463
|
|
|
464 <script src="blastResult.js"></script>
|
|
|
465 Score = 732 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
|
|
|
466 Identities = 336/348 (97%), Positives = 343/348 (99%), Gaps = 0/348 (0%)
|
|
|
467 Frame = +1
|
|
|
468
|
|
|
469 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
|
|
|
470 MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY
|
|
|
471 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 180
|
|
|
472
|
|
|
473 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
|
|
|
474 VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG
|
|
|
475 Sbjct 181 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 360
|
|
|
476
|
|
|
477 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
|
|
|
478 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP
|
|
|
479 Sbjct 361 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP 540
|
|
|
480
|
|
|
481 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
|
|
|
482 EG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQES
|
|
|
483 Sbjct 541 EGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQES 720
|
|
|
484
|
|
|
485 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
|
|
|
486 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++I
|
|
|
487 Sbjct 721 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSI 900
|
|
|
488
|
|
|
489 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 348
|
|
|
490 YNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA
|
|
|
491 Sbjct 901 YNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA 1044
|
|
|
492
|
|
|
493
|
|
|
494
|
|
|
495 Lambda K H
|
|
|
496 0.351 0.182 0.707
|
|
|
497
|
|
|
498 Gapped
|
|
|
499 Lambda K H
|
|
|
500 0.299 0.0710 0.270
|
|
|
501
|
|
|
502 Effective search space used: 109230
|
|
|
503
|
|
|
504
|
|
|
505 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
|
|
|
506
|
|
|
507 Length=348
|
|
|
508
|
|
|
509 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
|
|
|
510 cds
|
|
|
511
|
|
|
512 Length=1574
|
|
|
513
|
|
|
514 <script src="blastResult.js"></script>
|
|
|
515 Score = 646 bits (1489), Expect = 0.0, Method: Compositional matrix adjust.
|
|
|
516 Identities = 290/342 (85%), Positives = 320/342 (94%), Gaps = 1/342 (0%)
|
|
|
517 Frame = +3
|
|
|
518
|
|
|
519 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
|
|
|
520 MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLY
|
|
|
521 Sbjct 42 MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLY 221
|
|
|
522
|
|
|
523 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
|
|
|
524 VT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S+ GYF+ G TGC +EGFFATLG
|
|
|
525 Sbjct 222 VTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLG 401
|
|
|
526
|
|
|
527 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
|
|
|
528 GEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIP
|
|
|
529 Sbjct 402 GEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIP 581
|
|
|
530
|
|
|
531 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
|
|
|
532 EG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQES
|
|
|
533 Sbjct 582 EGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQES 761
|
|
|
534
|
|
|
535 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
|
|
|
536 ATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF+ QGS FGPIFMT+PAFFAKS++I
|
|
|
537 Sbjct 762 ATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSI 941
|
|
|
538
|
|
|
539 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE 341
|
|
|
540 YNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE
|
|
|
541 Sbjct 942 YNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE 1067
|
|
|
542
|
|
|
543
|
|
|
544
|
|
|
545 Lambda K H
|
|
|
546 0.351 0.182 0.707
|
|
|
547
|
|
|
548 Gapped
|
|
|
549 Lambda K H
|
|
|
550 0.299 0.0710 0.270
|
|
|
551
|
|
|
552 Effective search space used: 109230
|
|
|
553
|
|
|
554
|
|
|
555 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
|
|
|
556
|
|
|
557 Length=348
|
|
|
558
|
|
|
559 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
|
|
|
560 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
|
|
|
561
|
|
|
562 Length=4301
|
|
|
563
|
|
|
564 <script src="blastResult.js"></script>
|
|
|
565 Score = 151 bits (342), Expect(2) = 1e-72, Method: Compositional matrix adjust.
|
|
|
566 Identities = 69/74 (94%), Positives = 73/74 (99%), Gaps = 0/74 (0%)
|
|
|
567 Frame = +3
|
|
|
568
|
|
|
569 Query 239 ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSA 298
|
|
|
570 ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS+
|
|
|
571 Sbjct 3147 ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSS 3326
|
|
|
572
|
|
|
573 Query 299 AIYNPVIYIMMNKQ 312
|
|
|
574 +IYNPVIYIMMNKQ
|
|
|
575 Sbjct 3327 SIYNPVIYIMMNKQ 3368
|
|
|
576
|
|
|
577
|
|
|
578 Score = 126 bits (284), Expect(2) = 1e-72, Method: Compositional matrix adjust.
|
|
|
579 Identities = 54/59 (92%), Positives = 57/59 (97%), Gaps = 0/59 (0%)
|
|
|
580 Frame = +2
|
|
|
581
|
|
|
582 Query 177 RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA 235
|
|
|
583 RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +
|
|
|
584 Sbjct 2855 RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS 3031
|
|
|
585
|
|
|
586
|
|
|
587 Score = 229 bits (523), Expect = 1e-64, Method: Compositional matrix adjust.
|
|
|
588 Identities = 107/111 (97%), Positives = 109/111 (99%), Gaps = 0/111 (0%)
|
|
|
589 Frame = +1
|
|
|
590
|
|
|
591 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70
|
|
|
592 VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
|
|
|
593 Sbjct 1 VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180
|
|
|
594
|
|
|
595 Query 71 PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG 121
|
|
|
596 PLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG
|
|
|
597 Sbjct 181 PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 333
|
|
|
598
|
|
|
599
|
|
|
600 Score = 122 bits (276), Expect = 1e-32, Method: Compositional matrix adjust.
|
|
|
601 Identities = 55/59 (94%), Positives = 56/59 (95%), Gaps = 0/59 (0%)
|
|
|
602 Frame = +3
|
|
|
603
|
|
|
604 Query 119 LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR 177
|
|
|
605 L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR
|
|
|
606 Sbjct 1404 LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR 1580
|
|
|
607
|
|
|
608
|
|
|
609 Score = 57.7 bits (125), Expect = 6e-13, Method: Compositional matrix adjust.
|
|
|
610 Identities = 23/26 (89%), Positives = 24/26 (93%), Gaps = 0/26 (0%)
|
|
|
611 Frame = +1
|
|
|
612
|
|
|
613 Query 312 QFRNCMLTTICCGKNPLGDDEASATV 337
|
|
|
614 QFRNCMLTT+CCGKNPLGDDEAS T
|
|
|
615 Sbjct 4222 QFRNCMLTTLCCGKNPLGDDEASTTA 4299
|
|
|
616
|
|
|
617
|
|
|
618
|
|
|
619 Lambda K H
|
|
|
620 0.351 0.182 0.707
|
|
|
621
|
|
|
622 Gapped
|
|
|
623 Lambda K H
|
|
|
624 0.299 0.0710 0.270
|
|
|
625
|
|
|
626 Effective search space used: 109230
|
|
|
627
|
|
|
628
|
|
|
629 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
|
|
|
630
|
|
|
631 Length=348
|
|
|
632
|
|
|
633 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
|
|
|
634 (RHO) mRNA, partial cds
|
|
|
635
|
|
|
636 Length=983
|
|
|
637
|
|
|
638 <script src="blastResult.js"></script>
|
|
|
639 Score = 658 bits (1517), Expect = 0.0, Method: Compositional matrix adjust.
|
|
|
640 Identities = 310/326 (96%), Positives = 322/326 (99%), Gaps = 0/326 (0%)
|
|
|
641 Frame = +1
|
|
|
642
|
|
|
643 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70
|
|
|
644 VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
|
|
|
645 Sbjct 1 VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180
|
|
|
646
|
|
|
647 Query 71 PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVV 130
|
|
|
648 PLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVV
|
|
|
649 Sbjct 181 PLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVV 360
|
|
|
650
|
|
|
651 Query 131 LAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGID 190
|
|
|
652 LAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGID
|
|
|
653 Sbjct 361 LAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGID 540
|
|
|
654
|
|
|
655 Query 191 YYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV 250
|
|
|
656 YYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEV
|
|
|
657 Sbjct 541 YYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV 720
|
|
|
658
|
|
|
659 Query 251 TRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMN 310
|
|
|
660 TRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMN
|
|
|
661 Sbjct 721 TRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMN 900
|
|
|
662
|
|
|
663 Query 311 KQFRNCMLTTICCGKNPLGDDEASAT 336
|
|
|
664 KQFRNCMLTT+CCGKNPLGDDEAS T
|
|
|
665 Sbjct 901 KQFRNCMLTTLCCGKNPLGDDEASTT 978
|
|
|
666
|
|
|
667
|
|
|
668
|
|
|
669 Lambda K H
|
|
|
670 0.351 0.182 0.707
|
|
|
671
|
|
|
672 Gapped
|
|
|
673 Lambda K H
|
|
|
674 0.299 0.0710 0.270
|
|
|
675
|
|
|
676 Effective search space used: 109230
|
|
|
677
|
|
|
678
|
|
|
679 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
|
|
|
680
|
|
|
681 Length=348
|
|
|
682
|
|
|
683 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
|
|
|
684 rhodopsin, complete cds
|
|
|
685
|
|
|
686 Length=1047
|
|
|
687
|
|
|
688 <script src="blastResult.js"></script>
|
|
|
689 Score = 711 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
|
|
|
690 Identities = 325/348 (94%), Positives = 337/348 (97%), Gaps = 0/348 (0%)
|
|
|
691 Frame = +1
|
|
|
692
|
|
|
693 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
|
|
|
694 MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLY
|
|
|
695 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLY 180
|
|
|
696
|
|
|
697 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
|
|
|
698 VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG
|
|
|
699 Sbjct 181 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 360
|
|
|
700
|
|
|
701 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
|
|
|
702 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP
|
|
|
703 Sbjct 361 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP 540
|
|
|
704
|
|
|
705 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
|
|
|
706 EG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQES
|
|
|
707 Sbjct 541 EGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES 720
|
|
|
708
|
|
|
709 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
|
|
|
710 ATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+
|
|
|
711 Sbjct 721 ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAV 900
|
|
|
712
|
|
|
713 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 348
|
|
|
714 YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA
|
|
|
715 Sbjct 901 YNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA 1044
|
|
|
716
|
|
|
717
|
|
|
718
|
|
|
719 Lambda K H
|
|
|
720 0.351 0.182 0.707
|
|
|
721
|
|
|
722 Gapped
|
|
|
723 Lambda K H
|
|
|
724 0.299 0.0710 0.270
|
|
|
725
|
|
|
726 Effective search space used: 109230
|
|
|
727
|
|
|
728
|
|
|
729 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
|
|
|
730
|
|
|
731 Length=348
|
|
|
732
|
|
|
733 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
|
|
|
734 water form rod opsin, complete cds
|
|
|
735
|
|
|
736 Length=1344
|
|
|
737
|
|
|
738 <script src="blastResult.js"></script>
|
|
|
739 Score = 626 bits (1444), Expect = 0.0, Method: Compositional matrix adjust.
|
|
|
740 Identities = 281/342 (83%), Positives = 311/342 (91%), Gaps = 1/342 (0%)
|
|
|
741 Frame = +2
|
|
|
742
|
|
|
743 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
|
|
|
744 MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLY
|
|
|
745 Sbjct 23 MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLY 202
|
|
|
746
|
|
|
747 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
|
|
|
748 VT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLG
|
|
|
749 Sbjct 203 VTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLG 382
|
|
|
750
|
|
|
751 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
|
|
|
752 GEIALW LVVLAIER++VVCKP++NFRFGE HAIMGV TW MALACA PPL GWSRYIP
|
|
|
753 Sbjct 383 GEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIP 562
|
|
|
754
|
|
|
755 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
|
|
|
756 EGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES
|
|
|
757 Sbjct 563 EGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQES 742
|
|
|
758
|
|
|
759 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
|
|
|
760 TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA YIFTHQGS FGPIFMTIP+FFAKS+A+
|
|
|
761 Sbjct 743 ETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSAL 922
|
|
|
762
|
|
|
763 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE 341
|
|
|
764 YNP+IYI MNKQFR CM+TT+CCGKNP +D ASAT SKTE
|
|
|
765 Sbjct 923 YNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE 1048
|
|
|
766
|
|
|
767
|
|
|
768
|
|
|
769 Lambda K H
|
|
|
770 0.351 0.182 0.707
|
|
|
771
|
|
|
772 Gapped
|
|
|
773 Lambda K H
|
|
|
774 0.299 0.0710 0.270
|
|
|
775
|
|
|
776 Effective search space used: 109230
|
|
|
777
|
|
|
778
|
|
|
779
|
|
|
780
|
|
|
781 Matrix: BLOSUM80
|
|
|
782 Gap Penalties: Existence: 10, Extension: 1
|
|
|
783 Neighboring words threshold: 14
|
|
|
784 Window for multiple hits: 25
|
|
|
785 </PRE>
|
|
|
786 </BODY>
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|
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787 </HTML>
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