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comparison test-data/tblastn_four_human_vs_rhodopsin.html @ 0:d375502056f1 draft

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date Fri, 17 Aug 2012 09:11:43 -0400
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1 <HTML>
2 <TITLE>BLAST Search Results</TITLE>
3 <BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099">
4 <PRE>
5
6 <b>TBLASTN 2.2.25+</b>
7
8
9 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
10 OS=Homo sapiens GN=ERP44 PE=1 SV=1
11
12 Length=406
13
14 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
15
16 Length=1047
17
18
19 ***** No hits found *****
20
21
22
23 Lambda K H
24 0.347 0.182 0.684
25
26 Gapped
27 Lambda K H
28 0.299 0.0710 0.270
29
30 Effective search space used: 127710
31
32
33 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
34 OS=Homo sapiens GN=ERP44 PE=1 SV=1
35
36 Length=406
37
38 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
39 cds
40
41 Length=1574
42
43
44 ***** No hits found *****
45
46
47
48 Lambda K H
49 0.347 0.182 0.684
50
51 Gapped
52 Lambda K H
53 0.299 0.0710 0.270
54
55 Effective search space used: 127710
56
57
58 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
59 OS=Homo sapiens GN=ERP44 PE=1 SV=1
60
61 Length=406
62
63 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
64 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
65
66 Length=4301
67
68
69 ***** No hits found *****
70
71
72
73 Lambda K H
74 0.347 0.182 0.684
75
76 Gapped
77 Lambda K H
78 0.299 0.0710 0.270
79
80 Effective search space used: 127710
81
82
83 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
84 OS=Homo sapiens GN=ERP44 PE=1 SV=1
85
86 Length=406
87
88 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
89 (RHO) mRNA, partial cds
90
91 Length=983
92
93
94 ***** No hits found *****
95
96
97
98 Lambda K H
99 0.347 0.182 0.684
100
101 Gapped
102 Lambda K H
103 0.299 0.0710 0.270
104
105 Effective search space used: 127710
106
107
108 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
109 OS=Homo sapiens GN=ERP44 PE=1 SV=1
110
111 Length=406
112
113 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
114 rhodopsin, complete cds
115
116 Length=1047
117
118
119 ***** No hits found *****
120
121
122
123 Lambda K H
124 0.347 0.182 0.684
125
126 Gapped
127 Lambda K H
128 0.299 0.0710 0.270
129
130 Effective search space used: 127710
131
132
133 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
134 OS=Homo sapiens GN=ERP44 PE=1 SV=1
135
136 Length=406
137
138 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
139 water form rod opsin, complete cds
140
141 Length=1344
142
143
144 ***** No hits found *****
145
146
147
148 Lambda K H
149 0.347 0.182 0.684
150
151 Gapped
152 Lambda K H
153 0.299 0.0710 0.270
154
155 Effective search space used: 127710
156
157
158 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
159 GN=BMP2K PE=1 SV=2
160
161 Length=1161
162
163 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
164
165 Length=1047
166
167
168 ***** No hits found *****
169
170
171
172 Lambda K H
173 0.334 0.170 0.615
174
175 Gapped
176 Lambda K H
177 0.299 0.0710 0.270
178
179 Effective search space used: 370988
180
181
182 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
183 GN=BMP2K PE=1 SV=2
184
185 Length=1161
186
187 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
188 cds
189
190 Length=1574
191
192
193 ***** No hits found *****
194
195
196
197 Lambda K H
198 0.334 0.170 0.615
199
200 Gapped
201 Lambda K H
202 0.299 0.0710 0.270
203
204 Effective search space used: 370988
205
206
207 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
208 GN=BMP2K PE=1 SV=2
209
210 Length=1161
211
212 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
213 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
214
215 Length=4301
216
217
218 ***** No hits found *****
219
220
221
222 Lambda K H
223 0.334 0.170 0.615
224
225 Gapped
226 Lambda K H
227 0.299 0.0710 0.270
228
229 Effective search space used: 370988
230
231
232 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
233 GN=BMP2K PE=1 SV=2
234
235 Length=1161
236
237 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
238 (RHO) mRNA, partial cds
239
240 Length=983
241
242
243 ***** No hits found *****
244
245
246
247 Lambda K H
248 0.334 0.170 0.615
249
250 Gapped
251 Lambda K H
252 0.299 0.0710 0.270
253
254 Effective search space used: 370988
255
256
257 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
258 GN=BMP2K PE=1 SV=2
259
260 Length=1161
261
262 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
263 rhodopsin, complete cds
264
265 Length=1047
266
267
268 ***** No hits found *****
269
270
271
272 Lambda K H
273 0.334 0.170 0.615
274
275 Gapped
276 Lambda K H
277 0.299 0.0710 0.270
278
279 Effective search space used: 370988
280
281
282 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
283 GN=BMP2K PE=1 SV=2
284
285 Length=1161
286
287 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
288 water form rod opsin, complete cds
289
290 Length=1344
291
292
293 ***** No hits found *****
294
295
296
297 Lambda K H
298 0.334 0.170 0.615
299
300 Gapped
301 Lambda K H
302 0.299 0.0710 0.270
303
304 Effective search space used: 370988
305
306
307 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
308 SV=4
309
310 Length=1382
311
312 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
313
314 Length=1047
315
316
317 ***** No hits found *****
318
319
320
321 Lambda K H
322 0.346 0.180 0.700
323
324 Gapped
325 Lambda K H
326 0.299 0.0710 0.270
327
328 Effective search space used: 441350
329
330
331 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
332 SV=4
333
334 Length=1382
335
336 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
337 cds
338
339 Length=1574
340
341
342 ***** No hits found *****
343
344
345
346 Lambda K H
347 0.346 0.180 0.700
348
349 Gapped
350 Lambda K H
351 0.299 0.0710 0.270
352
353 Effective search space used: 441350
354
355
356 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
357 SV=4
358
359 Length=1382
360
361 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
362 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
363
364 Length=4301
365
366
367 ***** No hits found *****
368
369
370
371 Lambda K H
372 0.346 0.180 0.700
373
374 Gapped
375 Lambda K H
376 0.299 0.0710 0.270
377
378 Effective search space used: 441350
379
380
381 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
382 SV=4
383
384 Length=1382
385
386 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
387 (RHO) mRNA, partial cds
388
389 Length=983
390
391
392 ***** No hits found *****
393
394
395
396 Lambda K H
397 0.346 0.180 0.700
398
399 Gapped
400 Lambda K H
401 0.299 0.0710 0.270
402
403 Effective search space used: 441350
404
405
406 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
407 SV=4
408
409 Length=1382
410
411 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
412 rhodopsin, complete cds
413
414 Length=1047
415
416
417 ***** No hits found *****
418
419
420
421 Lambda K H
422 0.346 0.180 0.700
423
424 Gapped
425 Lambda K H
426 0.299 0.0710 0.270
427
428 Effective search space used: 441350
429
430
431 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
432 SV=4
433
434 Length=1382
435
436 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
437 water form rod opsin, complete cds
438
439 Length=1344
440
441
442 ***** No hits found *****
443
444
445
446 Lambda K H
447 0.346 0.180 0.700
448
449 Gapped
450 Lambda K H
451 0.299 0.0710 0.270
452
453 Effective search space used: 441350
454
455
456 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
457
458 Length=348
459
460 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
461
462 Length=1047
463
464 <script src="blastResult.js"></script>
465 Score = 732 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
466 Identities = 336/348 (97%), Positives = 343/348 (99%), Gaps = 0/348 (0%)
467 Frame = +1
468
469 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
470 MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY
471 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 180
472
473 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
474 VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG
475 Sbjct 181 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 360
476
477 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
478 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP
479 Sbjct 361 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP 540
480
481 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
482 EG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQES
483 Sbjct 541 EGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQES 720
484
485 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
486 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++I
487 Sbjct 721 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSI 900
488
489 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 348
490 YNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA
491 Sbjct 901 YNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA 1044
492
493
494
495 Lambda K H
496 0.351 0.182 0.707
497
498 Gapped
499 Lambda K H
500 0.299 0.0710 0.270
501
502 Effective search space used: 109230
503
504
505 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
506
507 Length=348
508
509 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
510 cds
511
512 Length=1574
513
514 <script src="blastResult.js"></script>
515 Score = 646 bits (1489), Expect = 0.0, Method: Compositional matrix adjust.
516 Identities = 290/342 (85%), Positives = 320/342 (94%), Gaps = 1/342 (0%)
517 Frame = +3
518
519 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
520 MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLY
521 Sbjct 42 MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLY 221
522
523 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
524 VT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S+ GYF+ G TGC +EGFFATLG
525 Sbjct 222 VTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLG 401
526
527 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
528 GEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIP
529 Sbjct 402 GEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIP 581
530
531 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
532 EG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQES
533 Sbjct 582 EGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQES 761
534
535 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
536 ATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF+ QGS FGPIFMT+PAFFAKS++I
537 Sbjct 762 ATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSI 941
538
539 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE 341
540 YNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE
541 Sbjct 942 YNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE 1067
542
543
544
545 Lambda K H
546 0.351 0.182 0.707
547
548 Gapped
549 Lambda K H
550 0.299 0.0710 0.270
551
552 Effective search space used: 109230
553
554
555 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
556
557 Length=348
558
559 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
560 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
561
562 Length=4301
563
564 <script src="blastResult.js"></script>
565 Score = 151 bits (342), Expect(2) = 1e-72, Method: Compositional matrix adjust.
566 Identities = 69/74 (94%), Positives = 73/74 (99%), Gaps = 0/74 (0%)
567 Frame = +3
568
569 Query 239 ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSA 298
570 ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS+
571 Sbjct 3147 ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSS 3326
572
573 Query 299 AIYNPVIYIMMNKQ 312
574 +IYNPVIYIMMNKQ
575 Sbjct 3327 SIYNPVIYIMMNKQ 3368
576
577
578 Score = 126 bits (284), Expect(2) = 1e-72, Method: Compositional matrix adjust.
579 Identities = 54/59 (92%), Positives = 57/59 (97%), Gaps = 0/59 (0%)
580 Frame = +2
581
582 Query 177 RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA 235
583 RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +
584 Sbjct 2855 RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS 3031
585
586
587 Score = 229 bits (523), Expect = 1e-64, Method: Compositional matrix adjust.
588 Identities = 107/111 (97%), Positives = 109/111 (99%), Gaps = 0/111 (0%)
589 Frame = +1
590
591 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70
592 VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
593 Sbjct 1 VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180
594
595 Query 71 PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG 121
596 PLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG
597 Sbjct 181 PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 333
598
599
600 Score = 122 bits (276), Expect = 1e-32, Method: Compositional matrix adjust.
601 Identities = 55/59 (94%), Positives = 56/59 (95%), Gaps = 0/59 (0%)
602 Frame = +3
603
604 Query 119 LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR 177
605 L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR
606 Sbjct 1404 LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR 1580
607
608
609 Score = 57.7 bits (125), Expect = 6e-13, Method: Compositional matrix adjust.
610 Identities = 23/26 (89%), Positives = 24/26 (93%), Gaps = 0/26 (0%)
611 Frame = +1
612
613 Query 312 QFRNCMLTTICCGKNPLGDDEASATV 337
614 QFRNCMLTT+CCGKNPLGDDEAS T
615 Sbjct 4222 QFRNCMLTTLCCGKNPLGDDEASTTA 4299
616
617
618
619 Lambda K H
620 0.351 0.182 0.707
621
622 Gapped
623 Lambda K H
624 0.299 0.0710 0.270
625
626 Effective search space used: 109230
627
628
629 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
630
631 Length=348
632
633 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
634 (RHO) mRNA, partial cds
635
636 Length=983
637
638 <script src="blastResult.js"></script>
639 Score = 658 bits (1517), Expect = 0.0, Method: Compositional matrix adjust.
640 Identities = 310/326 (96%), Positives = 322/326 (99%), Gaps = 0/326 (0%)
641 Frame = +1
642
643 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70
644 VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
645 Sbjct 1 VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180
646
647 Query 71 PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVV 130
648 PLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVV
649 Sbjct 181 PLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVV 360
650
651 Query 131 LAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGID 190
652 LAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGID
653 Sbjct 361 LAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGID 540
654
655 Query 191 YYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV 250
656 YYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEV
657 Sbjct 541 YYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV 720
658
659 Query 251 TRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMN 310
660 TRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMN
661 Sbjct 721 TRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMN 900
662
663 Query 311 KQFRNCMLTTICCGKNPLGDDEASAT 336
664 KQFRNCMLTT+CCGKNPLGDDEAS T
665 Sbjct 901 KQFRNCMLTTLCCGKNPLGDDEASTT 978
666
667
668
669 Lambda K H
670 0.351 0.182 0.707
671
672 Gapped
673 Lambda K H
674 0.299 0.0710 0.270
675
676 Effective search space used: 109230
677
678
679 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
680
681 Length=348
682
683 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
684 rhodopsin, complete cds
685
686 Length=1047
687
688 <script src="blastResult.js"></script>
689 Score = 711 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
690 Identities = 325/348 (94%), Positives = 337/348 (97%), Gaps = 0/348 (0%)
691 Frame = +1
692
693 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
694 MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLY
695 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLY 180
696
697 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
698 VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG
699 Sbjct 181 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 360
700
701 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
702 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP
703 Sbjct 361 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP 540
704
705 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
706 EG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQES
707 Sbjct 541 EGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES 720
708
709 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
710 ATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+
711 Sbjct 721 ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAV 900
712
713 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 348
714 YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA
715 Sbjct 901 YNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA 1044
716
717
718
719 Lambda K H
720 0.351 0.182 0.707
721
722 Gapped
723 Lambda K H
724 0.299 0.0710 0.270
725
726 Effective search space used: 109230
727
728
729 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
730
731 Length=348
732
733 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
734 water form rod opsin, complete cds
735
736 Length=1344
737
738 <script src="blastResult.js"></script>
739 Score = 626 bits (1444), Expect = 0.0, Method: Compositional matrix adjust.
740 Identities = 281/342 (83%), Positives = 311/342 (91%), Gaps = 1/342 (0%)
741 Frame = +2
742
743 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
744 MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLY
745 Sbjct 23 MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLY 202
746
747 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
748 VT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLG
749 Sbjct 203 VTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLG 382
750
751 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
752 GEIALW LVVLAIER++VVCKP++NFRFGE HAIMGV TW MALACA PPL GWSRYIP
753 Sbjct 383 GEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIP 562
754
755 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
756 EGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES
757 Sbjct 563 EGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQES 742
758
759 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
760 TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA YIFTHQGS FGPIFMTIP+FFAKS+A+
761 Sbjct 743 ETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSAL 922
762
763 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE 341
764 YNP+IYI MNKQFR CM+TT+CCGKNP +D ASAT SKTE
765 Sbjct 923 YNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE 1048
766
767
768
769 Lambda K H
770 0.351 0.182 0.707
771
772 Gapped
773 Lambda K H
774 0.299 0.0710 0.270
775
776 Effective search space used: 109230
777
778
779
780
781 Matrix: BLOSUM80
782 Gap Penalties: Existence: 10, Extension: 1
783 Neighboring words threshold: 14
784 Window for multiple hits: 25
785 </PRE>
786 </BODY>
787 </HTML>