annotate test-data/tblastn_four_human_vs_rhodopsin.html @ 4:9d5beacae92b draft

Uploaded v0.0.13 which uses the recently added error handling. No longer bundles the hide_stderr.py script which is now redundant.
author peterjc
date Wed, 19 Sep 2012 13:08:31 -0400
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1 <HTML>
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2 <TITLE>BLAST Search Results</TITLE>
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3 <BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099">
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4 <PRE>
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6 <b>TBLASTN 2.2.25+</b>
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9 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
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10 OS=Homo sapiens GN=ERP44 PE=1 SV=1
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14 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
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33 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
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34 OS=Homo sapiens GN=ERP44 PE=1 SV=1
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38 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
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39 cds
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58 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
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59 OS=Homo sapiens GN=ERP44 PE=1 SV=1
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63 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
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64 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
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83 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
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84 OS=Homo sapiens GN=ERP44 PE=1 SV=1
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88 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
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89 (RHO) mRNA, partial cds
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108 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
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109 OS=Homo sapiens GN=ERP44 PE=1 SV=1
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113 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
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114 rhodopsin, complete cds
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133 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
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134 OS=Homo sapiens GN=ERP44 PE=1 SV=1
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138 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
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139 water form rod opsin, complete cds
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158 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
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163 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
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182 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
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187 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
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188 cds
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213 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
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237 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
d375502056f1 Uploaded
devteam
parents:
diff changeset
238 (RHO) mRNA, partial cds
d375502056f1 Uploaded
devteam
parents:
diff changeset
239
d375502056f1 Uploaded
devteam
parents:
diff changeset
240 Length=983
d375502056f1 Uploaded
devteam
parents:
diff changeset
241
d375502056f1 Uploaded
devteam
parents:
diff changeset
242
d375502056f1 Uploaded
devteam
parents:
diff changeset
243 ***** No hits found *****
d375502056f1 Uploaded
devteam
parents:
diff changeset
244
d375502056f1 Uploaded
devteam
parents:
diff changeset
245
d375502056f1 Uploaded
devteam
parents:
diff changeset
246
d375502056f1 Uploaded
devteam
parents:
diff changeset
247 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
248 0.334 0.170 0.615
d375502056f1 Uploaded
devteam
parents:
diff changeset
249
d375502056f1 Uploaded
devteam
parents:
diff changeset
250 Gapped
d375502056f1 Uploaded
devteam
parents:
diff changeset
251 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
252 0.299 0.0710 0.270
d375502056f1 Uploaded
devteam
parents:
diff changeset
253
d375502056f1 Uploaded
devteam
parents:
diff changeset
254 Effective search space used: 370988
d375502056f1 Uploaded
devteam
parents:
diff changeset
255
d375502056f1 Uploaded
devteam
parents:
diff changeset
256
d375502056f1 Uploaded
devteam
parents:
diff changeset
257 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
d375502056f1 Uploaded
devteam
parents:
diff changeset
258 GN=BMP2K PE=1 SV=2
d375502056f1 Uploaded
devteam
parents:
diff changeset
259
d375502056f1 Uploaded
devteam
parents:
diff changeset
260 Length=1161
d375502056f1 Uploaded
devteam
parents:
diff changeset
261
d375502056f1 Uploaded
devteam
parents:
diff changeset
262 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
d375502056f1 Uploaded
devteam
parents:
diff changeset
263 rhodopsin, complete cds
d375502056f1 Uploaded
devteam
parents:
diff changeset
264
d375502056f1 Uploaded
devteam
parents:
diff changeset
265 Length=1047
d375502056f1 Uploaded
devteam
parents:
diff changeset
266
d375502056f1 Uploaded
devteam
parents:
diff changeset
267
d375502056f1 Uploaded
devteam
parents:
diff changeset
268 ***** No hits found *****
d375502056f1 Uploaded
devteam
parents:
diff changeset
269
d375502056f1 Uploaded
devteam
parents:
diff changeset
270
d375502056f1 Uploaded
devteam
parents:
diff changeset
271
d375502056f1 Uploaded
devteam
parents:
diff changeset
272 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
273 0.334 0.170 0.615
d375502056f1 Uploaded
devteam
parents:
diff changeset
274
d375502056f1 Uploaded
devteam
parents:
diff changeset
275 Gapped
d375502056f1 Uploaded
devteam
parents:
diff changeset
276 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
277 0.299 0.0710 0.270
d375502056f1 Uploaded
devteam
parents:
diff changeset
278
d375502056f1 Uploaded
devteam
parents:
diff changeset
279 Effective search space used: 370988
d375502056f1 Uploaded
devteam
parents:
diff changeset
280
d375502056f1 Uploaded
devteam
parents:
diff changeset
281
d375502056f1 Uploaded
devteam
parents:
diff changeset
282 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
d375502056f1 Uploaded
devteam
parents:
diff changeset
283 GN=BMP2K PE=1 SV=2
d375502056f1 Uploaded
devteam
parents:
diff changeset
284
d375502056f1 Uploaded
devteam
parents:
diff changeset
285 Length=1161
d375502056f1 Uploaded
devteam
parents:
diff changeset
286
d375502056f1 Uploaded
devteam
parents:
diff changeset
287 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
d375502056f1 Uploaded
devteam
parents:
diff changeset
288 water form rod opsin, complete cds
d375502056f1 Uploaded
devteam
parents:
diff changeset
289
d375502056f1 Uploaded
devteam
parents:
diff changeset
290 Length=1344
d375502056f1 Uploaded
devteam
parents:
diff changeset
291
d375502056f1 Uploaded
devteam
parents:
diff changeset
292
d375502056f1 Uploaded
devteam
parents:
diff changeset
293 ***** No hits found *****
d375502056f1 Uploaded
devteam
parents:
diff changeset
294
d375502056f1 Uploaded
devteam
parents:
diff changeset
295
d375502056f1 Uploaded
devteam
parents:
diff changeset
296
d375502056f1 Uploaded
devteam
parents:
diff changeset
297 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
298 0.334 0.170 0.615
d375502056f1 Uploaded
devteam
parents:
diff changeset
299
d375502056f1 Uploaded
devteam
parents:
diff changeset
300 Gapped
d375502056f1 Uploaded
devteam
parents:
diff changeset
301 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
302 0.299 0.0710 0.270
d375502056f1 Uploaded
devteam
parents:
diff changeset
303
d375502056f1 Uploaded
devteam
parents:
diff changeset
304 Effective search space used: 370988
d375502056f1 Uploaded
devteam
parents:
diff changeset
305
d375502056f1 Uploaded
devteam
parents:
diff changeset
306
d375502056f1 Uploaded
devteam
parents:
diff changeset
307 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
d375502056f1 Uploaded
devteam
parents:
diff changeset
308 SV=4
d375502056f1 Uploaded
devteam
parents:
diff changeset
309
d375502056f1 Uploaded
devteam
parents:
diff changeset
310 Length=1382
d375502056f1 Uploaded
devteam
parents:
diff changeset
311
d375502056f1 Uploaded
devteam
parents:
diff changeset
312 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
d375502056f1 Uploaded
devteam
parents:
diff changeset
313
d375502056f1 Uploaded
devteam
parents:
diff changeset
314 Length=1047
d375502056f1 Uploaded
devteam
parents:
diff changeset
315
d375502056f1 Uploaded
devteam
parents:
diff changeset
316
d375502056f1 Uploaded
devteam
parents:
diff changeset
317 ***** No hits found *****
d375502056f1 Uploaded
devteam
parents:
diff changeset
318
d375502056f1 Uploaded
devteam
parents:
diff changeset
319
d375502056f1 Uploaded
devteam
parents:
diff changeset
320
d375502056f1 Uploaded
devteam
parents:
diff changeset
321 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
322 0.346 0.180 0.700
d375502056f1 Uploaded
devteam
parents:
diff changeset
323
d375502056f1 Uploaded
devteam
parents:
diff changeset
324 Gapped
d375502056f1 Uploaded
devteam
parents:
diff changeset
325 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
326 0.299 0.0710 0.270
d375502056f1 Uploaded
devteam
parents:
diff changeset
327
d375502056f1 Uploaded
devteam
parents:
diff changeset
328 Effective search space used: 441350
d375502056f1 Uploaded
devteam
parents:
diff changeset
329
d375502056f1 Uploaded
devteam
parents:
diff changeset
330
d375502056f1 Uploaded
devteam
parents:
diff changeset
331 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
d375502056f1 Uploaded
devteam
parents:
diff changeset
332 SV=4
d375502056f1 Uploaded
devteam
parents:
diff changeset
333
d375502056f1 Uploaded
devteam
parents:
diff changeset
334 Length=1382
d375502056f1 Uploaded
devteam
parents:
diff changeset
335
d375502056f1 Uploaded
devteam
parents:
diff changeset
336 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
d375502056f1 Uploaded
devteam
parents:
diff changeset
337 cds
d375502056f1 Uploaded
devteam
parents:
diff changeset
338
d375502056f1 Uploaded
devteam
parents:
diff changeset
339 Length=1574
d375502056f1 Uploaded
devteam
parents:
diff changeset
340
d375502056f1 Uploaded
devteam
parents:
diff changeset
341
d375502056f1 Uploaded
devteam
parents:
diff changeset
342 ***** No hits found *****
d375502056f1 Uploaded
devteam
parents:
diff changeset
343
d375502056f1 Uploaded
devteam
parents:
diff changeset
344
d375502056f1 Uploaded
devteam
parents:
diff changeset
345
d375502056f1 Uploaded
devteam
parents:
diff changeset
346 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
347 0.346 0.180 0.700
d375502056f1 Uploaded
devteam
parents:
diff changeset
348
d375502056f1 Uploaded
devteam
parents:
diff changeset
349 Gapped
d375502056f1 Uploaded
devteam
parents:
diff changeset
350 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
351 0.299 0.0710 0.270
d375502056f1 Uploaded
devteam
parents:
diff changeset
352
d375502056f1 Uploaded
devteam
parents:
diff changeset
353 Effective search space used: 441350
d375502056f1 Uploaded
devteam
parents:
diff changeset
354
d375502056f1 Uploaded
devteam
parents:
diff changeset
355
d375502056f1 Uploaded
devteam
parents:
diff changeset
356 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
d375502056f1 Uploaded
devteam
parents:
diff changeset
357 SV=4
d375502056f1 Uploaded
devteam
parents:
diff changeset
358
d375502056f1 Uploaded
devteam
parents:
diff changeset
359 Length=1382
d375502056f1 Uploaded
devteam
parents:
diff changeset
360
d375502056f1 Uploaded
devteam
parents:
diff changeset
361 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
d375502056f1 Uploaded
devteam
parents:
diff changeset
362 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
d375502056f1 Uploaded
devteam
parents:
diff changeset
363
d375502056f1 Uploaded
devteam
parents:
diff changeset
364 Length=4301
d375502056f1 Uploaded
devteam
parents:
diff changeset
365
d375502056f1 Uploaded
devteam
parents:
diff changeset
366
d375502056f1 Uploaded
devteam
parents:
diff changeset
367 ***** No hits found *****
d375502056f1 Uploaded
devteam
parents:
diff changeset
368
d375502056f1 Uploaded
devteam
parents:
diff changeset
369
d375502056f1 Uploaded
devteam
parents:
diff changeset
370
d375502056f1 Uploaded
devteam
parents:
diff changeset
371 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
372 0.346 0.180 0.700
d375502056f1 Uploaded
devteam
parents:
diff changeset
373
d375502056f1 Uploaded
devteam
parents:
diff changeset
374 Gapped
d375502056f1 Uploaded
devteam
parents:
diff changeset
375 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
376 0.299 0.0710 0.270
d375502056f1 Uploaded
devteam
parents:
diff changeset
377
d375502056f1 Uploaded
devteam
parents:
diff changeset
378 Effective search space used: 441350
d375502056f1 Uploaded
devteam
parents:
diff changeset
379
d375502056f1 Uploaded
devteam
parents:
diff changeset
380
d375502056f1 Uploaded
devteam
parents:
diff changeset
381 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
d375502056f1 Uploaded
devteam
parents:
diff changeset
382 SV=4
d375502056f1 Uploaded
devteam
parents:
diff changeset
383
d375502056f1 Uploaded
devteam
parents:
diff changeset
384 Length=1382
d375502056f1 Uploaded
devteam
parents:
diff changeset
385
d375502056f1 Uploaded
devteam
parents:
diff changeset
386 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
d375502056f1 Uploaded
devteam
parents:
diff changeset
387 (RHO) mRNA, partial cds
d375502056f1 Uploaded
devteam
parents:
diff changeset
388
d375502056f1 Uploaded
devteam
parents:
diff changeset
389 Length=983
d375502056f1 Uploaded
devteam
parents:
diff changeset
390
d375502056f1 Uploaded
devteam
parents:
diff changeset
391
d375502056f1 Uploaded
devteam
parents:
diff changeset
392 ***** No hits found *****
d375502056f1 Uploaded
devteam
parents:
diff changeset
393
d375502056f1 Uploaded
devteam
parents:
diff changeset
394
d375502056f1 Uploaded
devteam
parents:
diff changeset
395
d375502056f1 Uploaded
devteam
parents:
diff changeset
396 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
397 0.346 0.180 0.700
d375502056f1 Uploaded
devteam
parents:
diff changeset
398
d375502056f1 Uploaded
devteam
parents:
diff changeset
399 Gapped
d375502056f1 Uploaded
devteam
parents:
diff changeset
400 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
401 0.299 0.0710 0.270
d375502056f1 Uploaded
devteam
parents:
diff changeset
402
d375502056f1 Uploaded
devteam
parents:
diff changeset
403 Effective search space used: 441350
d375502056f1 Uploaded
devteam
parents:
diff changeset
404
d375502056f1 Uploaded
devteam
parents:
diff changeset
405
d375502056f1 Uploaded
devteam
parents:
diff changeset
406 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
d375502056f1 Uploaded
devteam
parents:
diff changeset
407 SV=4
d375502056f1 Uploaded
devteam
parents:
diff changeset
408
d375502056f1 Uploaded
devteam
parents:
diff changeset
409 Length=1382
d375502056f1 Uploaded
devteam
parents:
diff changeset
410
d375502056f1 Uploaded
devteam
parents:
diff changeset
411 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
d375502056f1 Uploaded
devteam
parents:
diff changeset
412 rhodopsin, complete cds
d375502056f1 Uploaded
devteam
parents:
diff changeset
413
d375502056f1 Uploaded
devteam
parents:
diff changeset
414 Length=1047
d375502056f1 Uploaded
devteam
parents:
diff changeset
415
d375502056f1 Uploaded
devteam
parents:
diff changeset
416
d375502056f1 Uploaded
devteam
parents:
diff changeset
417 ***** No hits found *****
d375502056f1 Uploaded
devteam
parents:
diff changeset
418
d375502056f1 Uploaded
devteam
parents:
diff changeset
419
d375502056f1 Uploaded
devteam
parents:
diff changeset
420
d375502056f1 Uploaded
devteam
parents:
diff changeset
421 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
422 0.346 0.180 0.700
d375502056f1 Uploaded
devteam
parents:
diff changeset
423
d375502056f1 Uploaded
devteam
parents:
diff changeset
424 Gapped
d375502056f1 Uploaded
devteam
parents:
diff changeset
425 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
426 0.299 0.0710 0.270
d375502056f1 Uploaded
devteam
parents:
diff changeset
427
d375502056f1 Uploaded
devteam
parents:
diff changeset
428 Effective search space used: 441350
d375502056f1 Uploaded
devteam
parents:
diff changeset
429
d375502056f1 Uploaded
devteam
parents:
diff changeset
430
d375502056f1 Uploaded
devteam
parents:
diff changeset
431 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
d375502056f1 Uploaded
devteam
parents:
diff changeset
432 SV=4
d375502056f1 Uploaded
devteam
parents:
diff changeset
433
d375502056f1 Uploaded
devteam
parents:
diff changeset
434 Length=1382
d375502056f1 Uploaded
devteam
parents:
diff changeset
435
d375502056f1 Uploaded
devteam
parents:
diff changeset
436 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
d375502056f1 Uploaded
devteam
parents:
diff changeset
437 water form rod opsin, complete cds
d375502056f1 Uploaded
devteam
parents:
diff changeset
438
d375502056f1 Uploaded
devteam
parents:
diff changeset
439 Length=1344
d375502056f1 Uploaded
devteam
parents:
diff changeset
440
d375502056f1 Uploaded
devteam
parents:
diff changeset
441
d375502056f1 Uploaded
devteam
parents:
diff changeset
442 ***** No hits found *****
d375502056f1 Uploaded
devteam
parents:
diff changeset
443
d375502056f1 Uploaded
devteam
parents:
diff changeset
444
d375502056f1 Uploaded
devteam
parents:
diff changeset
445
d375502056f1 Uploaded
devteam
parents:
diff changeset
446 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
447 0.346 0.180 0.700
d375502056f1 Uploaded
devteam
parents:
diff changeset
448
d375502056f1 Uploaded
devteam
parents:
diff changeset
449 Gapped
d375502056f1 Uploaded
devteam
parents:
diff changeset
450 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
451 0.299 0.0710 0.270
d375502056f1 Uploaded
devteam
parents:
diff changeset
452
d375502056f1 Uploaded
devteam
parents:
diff changeset
453 Effective search space used: 441350
d375502056f1 Uploaded
devteam
parents:
diff changeset
454
d375502056f1 Uploaded
devteam
parents:
diff changeset
455
d375502056f1 Uploaded
devteam
parents:
diff changeset
456 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
d375502056f1 Uploaded
devteam
parents:
diff changeset
457
d375502056f1 Uploaded
devteam
parents:
diff changeset
458 Length=348
d375502056f1 Uploaded
devteam
parents:
diff changeset
459
d375502056f1 Uploaded
devteam
parents:
diff changeset
460 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
d375502056f1 Uploaded
devteam
parents:
diff changeset
461
d375502056f1 Uploaded
devteam
parents:
diff changeset
462 Length=1047
d375502056f1 Uploaded
devteam
parents:
diff changeset
463
d375502056f1 Uploaded
devteam
parents:
diff changeset
464 <script src="blastResult.js"></script>
d375502056f1 Uploaded
devteam
parents:
diff changeset
465 Score = 732 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
d375502056f1 Uploaded
devteam
parents:
diff changeset
466 Identities = 336/348 (97%), Positives = 343/348 (99%), Gaps = 0/348 (0%)
d375502056f1 Uploaded
devteam
parents:
diff changeset
467 Frame = +1
d375502056f1 Uploaded
devteam
parents:
diff changeset
468
d375502056f1 Uploaded
devteam
parents:
diff changeset
469 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
d375502056f1 Uploaded
devteam
parents:
diff changeset
470 MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY
d375502056f1 Uploaded
devteam
parents:
diff changeset
471 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 180
d375502056f1 Uploaded
devteam
parents:
diff changeset
472
d375502056f1 Uploaded
devteam
parents:
diff changeset
473 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
d375502056f1 Uploaded
devteam
parents:
diff changeset
474 VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG
d375502056f1 Uploaded
devteam
parents:
diff changeset
475 Sbjct 181 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 360
d375502056f1 Uploaded
devteam
parents:
diff changeset
476
d375502056f1 Uploaded
devteam
parents:
diff changeset
477 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
d375502056f1 Uploaded
devteam
parents:
diff changeset
478 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP
d375502056f1 Uploaded
devteam
parents:
diff changeset
479 Sbjct 361 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP 540
d375502056f1 Uploaded
devteam
parents:
diff changeset
480
d375502056f1 Uploaded
devteam
parents:
diff changeset
481 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
d375502056f1 Uploaded
devteam
parents:
diff changeset
482 EG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQES
d375502056f1 Uploaded
devteam
parents:
diff changeset
483 Sbjct 541 EGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQES 720
d375502056f1 Uploaded
devteam
parents:
diff changeset
484
d375502056f1 Uploaded
devteam
parents:
diff changeset
485 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
d375502056f1 Uploaded
devteam
parents:
diff changeset
486 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++I
d375502056f1 Uploaded
devteam
parents:
diff changeset
487 Sbjct 721 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSI 900
d375502056f1 Uploaded
devteam
parents:
diff changeset
488
d375502056f1 Uploaded
devteam
parents:
diff changeset
489 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 348
d375502056f1 Uploaded
devteam
parents:
diff changeset
490 YNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA
d375502056f1 Uploaded
devteam
parents:
diff changeset
491 Sbjct 901 YNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA 1044
d375502056f1 Uploaded
devteam
parents:
diff changeset
492
d375502056f1 Uploaded
devteam
parents:
diff changeset
493
d375502056f1 Uploaded
devteam
parents:
diff changeset
494
d375502056f1 Uploaded
devteam
parents:
diff changeset
495 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
496 0.351 0.182 0.707
d375502056f1 Uploaded
devteam
parents:
diff changeset
497
d375502056f1 Uploaded
devteam
parents:
diff changeset
498 Gapped
d375502056f1 Uploaded
devteam
parents:
diff changeset
499 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
500 0.299 0.0710 0.270
d375502056f1 Uploaded
devteam
parents:
diff changeset
501
d375502056f1 Uploaded
devteam
parents:
diff changeset
502 Effective search space used: 109230
d375502056f1 Uploaded
devteam
parents:
diff changeset
503
d375502056f1 Uploaded
devteam
parents:
diff changeset
504
d375502056f1 Uploaded
devteam
parents:
diff changeset
505 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
d375502056f1 Uploaded
devteam
parents:
diff changeset
506
d375502056f1 Uploaded
devteam
parents:
diff changeset
507 Length=348
d375502056f1 Uploaded
devteam
parents:
diff changeset
508
d375502056f1 Uploaded
devteam
parents:
diff changeset
509 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
d375502056f1 Uploaded
devteam
parents:
diff changeset
510 cds
d375502056f1 Uploaded
devteam
parents:
diff changeset
511
d375502056f1 Uploaded
devteam
parents:
diff changeset
512 Length=1574
d375502056f1 Uploaded
devteam
parents:
diff changeset
513
d375502056f1 Uploaded
devteam
parents:
diff changeset
514 <script src="blastResult.js"></script>
d375502056f1 Uploaded
devteam
parents:
diff changeset
515 Score = 646 bits (1489), Expect = 0.0, Method: Compositional matrix adjust.
d375502056f1 Uploaded
devteam
parents:
diff changeset
516 Identities = 290/342 (85%), Positives = 320/342 (94%), Gaps = 1/342 (0%)
d375502056f1 Uploaded
devteam
parents:
diff changeset
517 Frame = +3
d375502056f1 Uploaded
devteam
parents:
diff changeset
518
d375502056f1 Uploaded
devteam
parents:
diff changeset
519 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
d375502056f1 Uploaded
devteam
parents:
diff changeset
520 MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLY
d375502056f1 Uploaded
devteam
parents:
diff changeset
521 Sbjct 42 MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLY 221
d375502056f1 Uploaded
devteam
parents:
diff changeset
522
d375502056f1 Uploaded
devteam
parents:
diff changeset
523 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
d375502056f1 Uploaded
devteam
parents:
diff changeset
524 VT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S+ GYF+ G TGC +EGFFATLG
d375502056f1 Uploaded
devteam
parents:
diff changeset
525 Sbjct 222 VTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLG 401
d375502056f1 Uploaded
devteam
parents:
diff changeset
526
d375502056f1 Uploaded
devteam
parents:
diff changeset
527 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
d375502056f1 Uploaded
devteam
parents:
diff changeset
528 GEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIP
d375502056f1 Uploaded
devteam
parents:
diff changeset
529 Sbjct 402 GEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIP 581
d375502056f1 Uploaded
devteam
parents:
diff changeset
530
d375502056f1 Uploaded
devteam
parents:
diff changeset
531 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
d375502056f1 Uploaded
devteam
parents:
diff changeset
532 EG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQES
d375502056f1 Uploaded
devteam
parents:
diff changeset
533 Sbjct 582 EGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQES 761
d375502056f1 Uploaded
devteam
parents:
diff changeset
534
d375502056f1 Uploaded
devteam
parents:
diff changeset
535 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
d375502056f1 Uploaded
devteam
parents:
diff changeset
536 ATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF+ QGS FGPIFMT+PAFFAKS++I
d375502056f1 Uploaded
devteam
parents:
diff changeset
537 Sbjct 762 ATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSI 941
d375502056f1 Uploaded
devteam
parents:
diff changeset
538
d375502056f1 Uploaded
devteam
parents:
diff changeset
539 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE 341
d375502056f1 Uploaded
devteam
parents:
diff changeset
540 YNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE
d375502056f1 Uploaded
devteam
parents:
diff changeset
541 Sbjct 942 YNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE 1067
d375502056f1 Uploaded
devteam
parents:
diff changeset
542
d375502056f1 Uploaded
devteam
parents:
diff changeset
543
d375502056f1 Uploaded
devteam
parents:
diff changeset
544
d375502056f1 Uploaded
devteam
parents:
diff changeset
545 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
546 0.351 0.182 0.707
d375502056f1 Uploaded
devteam
parents:
diff changeset
547
d375502056f1 Uploaded
devteam
parents:
diff changeset
548 Gapped
d375502056f1 Uploaded
devteam
parents:
diff changeset
549 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
550 0.299 0.0710 0.270
d375502056f1 Uploaded
devteam
parents:
diff changeset
551
d375502056f1 Uploaded
devteam
parents:
diff changeset
552 Effective search space used: 109230
d375502056f1 Uploaded
devteam
parents:
diff changeset
553
d375502056f1 Uploaded
devteam
parents:
diff changeset
554
d375502056f1 Uploaded
devteam
parents:
diff changeset
555 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
d375502056f1 Uploaded
devteam
parents:
diff changeset
556
d375502056f1 Uploaded
devteam
parents:
diff changeset
557 Length=348
d375502056f1 Uploaded
devteam
parents:
diff changeset
558
d375502056f1 Uploaded
devteam
parents:
diff changeset
559 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
d375502056f1 Uploaded
devteam
parents:
diff changeset
560 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
d375502056f1 Uploaded
devteam
parents:
diff changeset
561
d375502056f1 Uploaded
devteam
parents:
diff changeset
562 Length=4301
d375502056f1 Uploaded
devteam
parents:
diff changeset
563
d375502056f1 Uploaded
devteam
parents:
diff changeset
564 <script src="blastResult.js"></script>
d375502056f1 Uploaded
devteam
parents:
diff changeset
565 Score = 151 bits (342), Expect(2) = 1e-72, Method: Compositional matrix adjust.
d375502056f1 Uploaded
devteam
parents:
diff changeset
566 Identities = 69/74 (94%), Positives = 73/74 (99%), Gaps = 0/74 (0%)
d375502056f1 Uploaded
devteam
parents:
diff changeset
567 Frame = +3
d375502056f1 Uploaded
devteam
parents:
diff changeset
568
d375502056f1 Uploaded
devteam
parents:
diff changeset
569 Query 239 ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSA 298
d375502056f1 Uploaded
devteam
parents:
diff changeset
570 ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS+
d375502056f1 Uploaded
devteam
parents:
diff changeset
571 Sbjct 3147 ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSS 3326
d375502056f1 Uploaded
devteam
parents:
diff changeset
572
d375502056f1 Uploaded
devteam
parents:
diff changeset
573 Query 299 AIYNPVIYIMMNKQ 312
d375502056f1 Uploaded
devteam
parents:
diff changeset
574 +IYNPVIYIMMNKQ
d375502056f1 Uploaded
devteam
parents:
diff changeset
575 Sbjct 3327 SIYNPVIYIMMNKQ 3368
d375502056f1 Uploaded
devteam
parents:
diff changeset
576
d375502056f1 Uploaded
devteam
parents:
diff changeset
577
d375502056f1 Uploaded
devteam
parents:
diff changeset
578 Score = 126 bits (284), Expect(2) = 1e-72, Method: Compositional matrix adjust.
d375502056f1 Uploaded
devteam
parents:
diff changeset
579 Identities = 54/59 (92%), Positives = 57/59 (97%), Gaps = 0/59 (0%)
d375502056f1 Uploaded
devteam
parents:
diff changeset
580 Frame = +2
d375502056f1 Uploaded
devteam
parents:
diff changeset
581
d375502056f1 Uploaded
devteam
parents:
diff changeset
582 Query 177 RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA 235
d375502056f1 Uploaded
devteam
parents:
diff changeset
583 RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +
d375502056f1 Uploaded
devteam
parents:
diff changeset
584 Sbjct 2855 RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS 3031
d375502056f1 Uploaded
devteam
parents:
diff changeset
585
d375502056f1 Uploaded
devteam
parents:
diff changeset
586
d375502056f1 Uploaded
devteam
parents:
diff changeset
587 Score = 229 bits (523), Expect = 1e-64, Method: Compositional matrix adjust.
d375502056f1 Uploaded
devteam
parents:
diff changeset
588 Identities = 107/111 (97%), Positives = 109/111 (99%), Gaps = 0/111 (0%)
d375502056f1 Uploaded
devteam
parents:
diff changeset
589 Frame = +1
d375502056f1 Uploaded
devteam
parents:
diff changeset
590
d375502056f1 Uploaded
devteam
parents:
diff changeset
591 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70
d375502056f1 Uploaded
devteam
parents:
diff changeset
592 VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
d375502056f1 Uploaded
devteam
parents:
diff changeset
593 Sbjct 1 VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180
d375502056f1 Uploaded
devteam
parents:
diff changeset
594
d375502056f1 Uploaded
devteam
parents:
diff changeset
595 Query 71 PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG 121
d375502056f1 Uploaded
devteam
parents:
diff changeset
596 PLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG
d375502056f1 Uploaded
devteam
parents:
diff changeset
597 Sbjct 181 PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 333
d375502056f1 Uploaded
devteam
parents:
diff changeset
598
d375502056f1 Uploaded
devteam
parents:
diff changeset
599
d375502056f1 Uploaded
devteam
parents:
diff changeset
600 Score = 122 bits (276), Expect = 1e-32, Method: Compositional matrix adjust.
d375502056f1 Uploaded
devteam
parents:
diff changeset
601 Identities = 55/59 (94%), Positives = 56/59 (95%), Gaps = 0/59 (0%)
d375502056f1 Uploaded
devteam
parents:
diff changeset
602 Frame = +3
d375502056f1 Uploaded
devteam
parents:
diff changeset
603
d375502056f1 Uploaded
devteam
parents:
diff changeset
604 Query 119 LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR 177
d375502056f1 Uploaded
devteam
parents:
diff changeset
605 L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR
d375502056f1 Uploaded
devteam
parents:
diff changeset
606 Sbjct 1404 LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR 1580
d375502056f1 Uploaded
devteam
parents:
diff changeset
607
d375502056f1 Uploaded
devteam
parents:
diff changeset
608
d375502056f1 Uploaded
devteam
parents:
diff changeset
609 Score = 57.7 bits (125), Expect = 6e-13, Method: Compositional matrix adjust.
d375502056f1 Uploaded
devteam
parents:
diff changeset
610 Identities = 23/26 (89%), Positives = 24/26 (93%), Gaps = 0/26 (0%)
d375502056f1 Uploaded
devteam
parents:
diff changeset
611 Frame = +1
d375502056f1 Uploaded
devteam
parents:
diff changeset
612
d375502056f1 Uploaded
devteam
parents:
diff changeset
613 Query 312 QFRNCMLTTICCGKNPLGDDEASATV 337
d375502056f1 Uploaded
devteam
parents:
diff changeset
614 QFRNCMLTT+CCGKNPLGDDEAS T
d375502056f1 Uploaded
devteam
parents:
diff changeset
615 Sbjct 4222 QFRNCMLTTLCCGKNPLGDDEASTTA 4299
d375502056f1 Uploaded
devteam
parents:
diff changeset
616
d375502056f1 Uploaded
devteam
parents:
diff changeset
617
d375502056f1 Uploaded
devteam
parents:
diff changeset
618
d375502056f1 Uploaded
devteam
parents:
diff changeset
619 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
620 0.351 0.182 0.707
d375502056f1 Uploaded
devteam
parents:
diff changeset
621
d375502056f1 Uploaded
devteam
parents:
diff changeset
622 Gapped
d375502056f1 Uploaded
devteam
parents:
diff changeset
623 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
624 0.299 0.0710 0.270
d375502056f1 Uploaded
devteam
parents:
diff changeset
625
d375502056f1 Uploaded
devteam
parents:
diff changeset
626 Effective search space used: 109230
d375502056f1 Uploaded
devteam
parents:
diff changeset
627
d375502056f1 Uploaded
devteam
parents:
diff changeset
628
d375502056f1 Uploaded
devteam
parents:
diff changeset
629 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
d375502056f1 Uploaded
devteam
parents:
diff changeset
630
d375502056f1 Uploaded
devteam
parents:
diff changeset
631 Length=348
d375502056f1 Uploaded
devteam
parents:
diff changeset
632
d375502056f1 Uploaded
devteam
parents:
diff changeset
633 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
d375502056f1 Uploaded
devteam
parents:
diff changeset
634 (RHO) mRNA, partial cds
d375502056f1 Uploaded
devteam
parents:
diff changeset
635
d375502056f1 Uploaded
devteam
parents:
diff changeset
636 Length=983
d375502056f1 Uploaded
devteam
parents:
diff changeset
637
d375502056f1 Uploaded
devteam
parents:
diff changeset
638 <script src="blastResult.js"></script>
d375502056f1 Uploaded
devteam
parents:
diff changeset
639 Score = 658 bits (1517), Expect = 0.0, Method: Compositional matrix adjust.
d375502056f1 Uploaded
devteam
parents:
diff changeset
640 Identities = 310/326 (96%), Positives = 322/326 (99%), Gaps = 0/326 (0%)
d375502056f1 Uploaded
devteam
parents:
diff changeset
641 Frame = +1
d375502056f1 Uploaded
devteam
parents:
diff changeset
642
d375502056f1 Uploaded
devteam
parents:
diff changeset
643 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70
d375502056f1 Uploaded
devteam
parents:
diff changeset
644 VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
d375502056f1 Uploaded
devteam
parents:
diff changeset
645 Sbjct 1 VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180
d375502056f1 Uploaded
devteam
parents:
diff changeset
646
d375502056f1 Uploaded
devteam
parents:
diff changeset
647 Query 71 PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVV 130
d375502056f1 Uploaded
devteam
parents:
diff changeset
648 PLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVV
d375502056f1 Uploaded
devteam
parents:
diff changeset
649 Sbjct 181 PLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVV 360
d375502056f1 Uploaded
devteam
parents:
diff changeset
650
d375502056f1 Uploaded
devteam
parents:
diff changeset
651 Query 131 LAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGID 190
d375502056f1 Uploaded
devteam
parents:
diff changeset
652 LAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGID
d375502056f1 Uploaded
devteam
parents:
diff changeset
653 Sbjct 361 LAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGID 540
d375502056f1 Uploaded
devteam
parents:
diff changeset
654
d375502056f1 Uploaded
devteam
parents:
diff changeset
655 Query 191 YYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV 250
d375502056f1 Uploaded
devteam
parents:
diff changeset
656 YYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEV
d375502056f1 Uploaded
devteam
parents:
diff changeset
657 Sbjct 541 YYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV 720
d375502056f1 Uploaded
devteam
parents:
diff changeset
658
d375502056f1 Uploaded
devteam
parents:
diff changeset
659 Query 251 TRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMN 310
d375502056f1 Uploaded
devteam
parents:
diff changeset
660 TRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMN
d375502056f1 Uploaded
devteam
parents:
diff changeset
661 Sbjct 721 TRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMN 900
d375502056f1 Uploaded
devteam
parents:
diff changeset
662
d375502056f1 Uploaded
devteam
parents:
diff changeset
663 Query 311 KQFRNCMLTTICCGKNPLGDDEASAT 336
d375502056f1 Uploaded
devteam
parents:
diff changeset
664 KQFRNCMLTT+CCGKNPLGDDEAS T
d375502056f1 Uploaded
devteam
parents:
diff changeset
665 Sbjct 901 KQFRNCMLTTLCCGKNPLGDDEASTT 978
d375502056f1 Uploaded
devteam
parents:
diff changeset
666
d375502056f1 Uploaded
devteam
parents:
diff changeset
667
d375502056f1 Uploaded
devteam
parents:
diff changeset
668
d375502056f1 Uploaded
devteam
parents:
diff changeset
669 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
670 0.351 0.182 0.707
d375502056f1 Uploaded
devteam
parents:
diff changeset
671
d375502056f1 Uploaded
devteam
parents:
diff changeset
672 Gapped
d375502056f1 Uploaded
devteam
parents:
diff changeset
673 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
674 0.299 0.0710 0.270
d375502056f1 Uploaded
devteam
parents:
diff changeset
675
d375502056f1 Uploaded
devteam
parents:
diff changeset
676 Effective search space used: 109230
d375502056f1 Uploaded
devteam
parents:
diff changeset
677
d375502056f1 Uploaded
devteam
parents:
diff changeset
678
d375502056f1 Uploaded
devteam
parents:
diff changeset
679 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
d375502056f1 Uploaded
devteam
parents:
diff changeset
680
d375502056f1 Uploaded
devteam
parents:
diff changeset
681 Length=348
d375502056f1 Uploaded
devteam
parents:
diff changeset
682
d375502056f1 Uploaded
devteam
parents:
diff changeset
683 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
d375502056f1 Uploaded
devteam
parents:
diff changeset
684 rhodopsin, complete cds
d375502056f1 Uploaded
devteam
parents:
diff changeset
685
d375502056f1 Uploaded
devteam
parents:
diff changeset
686 Length=1047
d375502056f1 Uploaded
devteam
parents:
diff changeset
687
d375502056f1 Uploaded
devteam
parents:
diff changeset
688 <script src="blastResult.js"></script>
d375502056f1 Uploaded
devteam
parents:
diff changeset
689 Score = 711 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
d375502056f1 Uploaded
devteam
parents:
diff changeset
690 Identities = 325/348 (94%), Positives = 337/348 (97%), Gaps = 0/348 (0%)
d375502056f1 Uploaded
devteam
parents:
diff changeset
691 Frame = +1
d375502056f1 Uploaded
devteam
parents:
diff changeset
692
d375502056f1 Uploaded
devteam
parents:
diff changeset
693 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
d375502056f1 Uploaded
devteam
parents:
diff changeset
694 MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLY
d375502056f1 Uploaded
devteam
parents:
diff changeset
695 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLY 180
d375502056f1 Uploaded
devteam
parents:
diff changeset
696
d375502056f1 Uploaded
devteam
parents:
diff changeset
697 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
d375502056f1 Uploaded
devteam
parents:
diff changeset
698 VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG
d375502056f1 Uploaded
devteam
parents:
diff changeset
699 Sbjct 181 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 360
d375502056f1 Uploaded
devteam
parents:
diff changeset
700
d375502056f1 Uploaded
devteam
parents:
diff changeset
701 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
d375502056f1 Uploaded
devteam
parents:
diff changeset
702 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP
d375502056f1 Uploaded
devteam
parents:
diff changeset
703 Sbjct 361 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP 540
d375502056f1 Uploaded
devteam
parents:
diff changeset
704
d375502056f1 Uploaded
devteam
parents:
diff changeset
705 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
d375502056f1 Uploaded
devteam
parents:
diff changeset
706 EG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQES
d375502056f1 Uploaded
devteam
parents:
diff changeset
707 Sbjct 541 EGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES 720
d375502056f1 Uploaded
devteam
parents:
diff changeset
708
d375502056f1 Uploaded
devteam
parents:
diff changeset
709 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
d375502056f1 Uploaded
devteam
parents:
diff changeset
710 ATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+
d375502056f1 Uploaded
devteam
parents:
diff changeset
711 Sbjct 721 ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAV 900
d375502056f1 Uploaded
devteam
parents:
diff changeset
712
d375502056f1 Uploaded
devteam
parents:
diff changeset
713 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 348
d375502056f1 Uploaded
devteam
parents:
diff changeset
714 YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA
d375502056f1 Uploaded
devteam
parents:
diff changeset
715 Sbjct 901 YNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA 1044
d375502056f1 Uploaded
devteam
parents:
diff changeset
716
d375502056f1 Uploaded
devteam
parents:
diff changeset
717
d375502056f1 Uploaded
devteam
parents:
diff changeset
718
d375502056f1 Uploaded
devteam
parents:
diff changeset
719 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
720 0.351 0.182 0.707
d375502056f1 Uploaded
devteam
parents:
diff changeset
721
d375502056f1 Uploaded
devteam
parents:
diff changeset
722 Gapped
d375502056f1 Uploaded
devteam
parents:
diff changeset
723 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
724 0.299 0.0710 0.270
d375502056f1 Uploaded
devteam
parents:
diff changeset
725
d375502056f1 Uploaded
devteam
parents:
diff changeset
726 Effective search space used: 109230
d375502056f1 Uploaded
devteam
parents:
diff changeset
727
d375502056f1 Uploaded
devteam
parents:
diff changeset
728
d375502056f1 Uploaded
devteam
parents:
diff changeset
729 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
d375502056f1 Uploaded
devteam
parents:
diff changeset
730
d375502056f1 Uploaded
devteam
parents:
diff changeset
731 Length=348
d375502056f1 Uploaded
devteam
parents:
diff changeset
732
d375502056f1 Uploaded
devteam
parents:
diff changeset
733 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
d375502056f1 Uploaded
devteam
parents:
diff changeset
734 water form rod opsin, complete cds
d375502056f1 Uploaded
devteam
parents:
diff changeset
735
d375502056f1 Uploaded
devteam
parents:
diff changeset
736 Length=1344
d375502056f1 Uploaded
devteam
parents:
diff changeset
737
d375502056f1 Uploaded
devteam
parents:
diff changeset
738 <script src="blastResult.js"></script>
d375502056f1 Uploaded
devteam
parents:
diff changeset
739 Score = 626 bits (1444), Expect = 0.0, Method: Compositional matrix adjust.
d375502056f1 Uploaded
devteam
parents:
diff changeset
740 Identities = 281/342 (83%), Positives = 311/342 (91%), Gaps = 1/342 (0%)
d375502056f1 Uploaded
devteam
parents:
diff changeset
741 Frame = +2
d375502056f1 Uploaded
devteam
parents:
diff changeset
742
d375502056f1 Uploaded
devteam
parents:
diff changeset
743 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
d375502056f1 Uploaded
devteam
parents:
diff changeset
744 MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLY
d375502056f1 Uploaded
devteam
parents:
diff changeset
745 Sbjct 23 MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLY 202
d375502056f1 Uploaded
devteam
parents:
diff changeset
746
d375502056f1 Uploaded
devteam
parents:
diff changeset
747 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
d375502056f1 Uploaded
devteam
parents:
diff changeset
748 VT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLG
d375502056f1 Uploaded
devteam
parents:
diff changeset
749 Sbjct 203 VTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLG 382
d375502056f1 Uploaded
devteam
parents:
diff changeset
750
d375502056f1 Uploaded
devteam
parents:
diff changeset
751 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
d375502056f1 Uploaded
devteam
parents:
diff changeset
752 GEIALW LVVLAIER++VVCKP++NFRFGE HAIMGV TW MALACA PPL GWSRYIP
d375502056f1 Uploaded
devteam
parents:
diff changeset
753 Sbjct 383 GEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIP 562
d375502056f1 Uploaded
devteam
parents:
diff changeset
754
d375502056f1 Uploaded
devteam
parents:
diff changeset
755 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
d375502056f1 Uploaded
devteam
parents:
diff changeset
756 EGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES
d375502056f1 Uploaded
devteam
parents:
diff changeset
757 Sbjct 563 EGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQES 742
d375502056f1 Uploaded
devteam
parents:
diff changeset
758
d375502056f1 Uploaded
devteam
parents:
diff changeset
759 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
d375502056f1 Uploaded
devteam
parents:
diff changeset
760 TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA YIFTHQGS FGPIFMTIP+FFAKS+A+
d375502056f1 Uploaded
devteam
parents:
diff changeset
761 Sbjct 743 ETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSAL 922
d375502056f1 Uploaded
devteam
parents:
diff changeset
762
d375502056f1 Uploaded
devteam
parents:
diff changeset
763 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE 341
d375502056f1 Uploaded
devteam
parents:
diff changeset
764 YNP+IYI MNKQFR CM+TT+CCGKNP +D ASAT SKTE
d375502056f1 Uploaded
devteam
parents:
diff changeset
765 Sbjct 923 YNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE 1048
d375502056f1 Uploaded
devteam
parents:
diff changeset
766
d375502056f1 Uploaded
devteam
parents:
diff changeset
767
d375502056f1 Uploaded
devteam
parents:
diff changeset
768
d375502056f1 Uploaded
devteam
parents:
diff changeset
769 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
770 0.351 0.182 0.707
d375502056f1 Uploaded
devteam
parents:
diff changeset
771
d375502056f1 Uploaded
devteam
parents:
diff changeset
772 Gapped
d375502056f1 Uploaded
devteam
parents:
diff changeset
773 Lambda K H
d375502056f1 Uploaded
devteam
parents:
diff changeset
774 0.299 0.0710 0.270
d375502056f1 Uploaded
devteam
parents:
diff changeset
775
d375502056f1 Uploaded
devteam
parents:
diff changeset
776 Effective search space used: 109230
d375502056f1 Uploaded
devteam
parents:
diff changeset
777
d375502056f1 Uploaded
devteam
parents:
diff changeset
778
d375502056f1 Uploaded
devteam
parents:
diff changeset
779
d375502056f1 Uploaded
devteam
parents:
diff changeset
780
d375502056f1 Uploaded
devteam
parents:
diff changeset
781 Matrix: BLOSUM80
d375502056f1 Uploaded
devteam
parents:
diff changeset
782 Gap Penalties: Existence: 10, Extension: 1
d375502056f1 Uploaded
devteam
parents:
diff changeset
783 Neighboring words threshold: 14
d375502056f1 Uploaded
devteam
parents:
diff changeset
784 Window for multiple hits: 25
d375502056f1 Uploaded
devteam
parents:
diff changeset
785 </PRE>
d375502056f1 Uploaded
devteam
parents:
diff changeset
786 </BODY>
d375502056f1 Uploaded
devteam
parents:
diff changeset
787 </HTML>