Mercurial > repos > devteam > ncbi_blast_plus

annotate test-data/tblastn_four_human_vs_rhodopsin.xml @ 25:e25d3acf6e68 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
v0.3.1 completed gzip support
author peterjc
date Tue, 23 Oct 2018 08:48:19 -0400
parents 31e517610e1f
children 87a7ee4cb36f
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
d375502056f1 Uploaded
devteam
parents:
diff changeset
1 <?xml version="1.0"?>
8
1f546099212f Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents: 0
diff changeset
2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
0
d375502056f1 Uploaded
devteam
parents:
diff changeset
3 <BlastOutput>
d375502056f1 Uploaded
devteam
parents:
diff changeset
4 <BlastOutput_program>tblastn</BlastOutput_program>
23
31e517610e1f v0.3.0 Updated for NCBI BLAST+ 2.7.1
peterjc
parents: 21
diff changeset
5 <BlastOutput_version>TBLASTN 2.7.1+</BlastOutput_version>
0
d375502056f1 Uploaded
devteam
parents:
diff changeset
6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
d375502056f1 Uploaded
devteam
parents:
diff changeset
7 <BlastOutput_db></BlastOutput_db>
d375502056f1 Uploaded
devteam
parents:
diff changeset
8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
d375502056f1 Uploaded
devteam
parents:
diff changeset
9 <BlastOutput_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</BlastOutput_query-def>
d375502056f1 Uploaded
devteam
parents:
diff changeset
10 <BlastOutput_query-len>406</BlastOutput_query-len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
11 <BlastOutput_param>
d375502056f1 Uploaded
devteam
parents:
diff changeset
12 <Parameters>
d375502056f1 Uploaded
devteam
parents:
diff changeset
13 <Parameters_matrix>BLOSUM80</Parameters_matrix>
d375502056f1 Uploaded
devteam
parents:
diff changeset
14 <Parameters_expect>1e-10</Parameters_expect>
d375502056f1 Uploaded
devteam
parents:
diff changeset
15 <Parameters_gap-open>10</Parameters_gap-open>
d375502056f1 Uploaded
devteam
parents:
diff changeset
16 <Parameters_gap-extend>1</Parameters_gap-extend>
d375502056f1 Uploaded
devteam
parents:
diff changeset
17 <Parameters_filter>F</Parameters_filter>
d375502056f1 Uploaded
devteam
parents:
diff changeset
18 </Parameters>
d375502056f1 Uploaded
devteam
parents:
diff changeset
19 </BlastOutput_param>
11
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
20 <BlastOutput_iterations>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
21 <Iteration>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
22 <Iteration_iter-num>1</Iteration_iter-num>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
23 <Iteration_query-ID>Query_1</Iteration_query-ID>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
24 <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
25 <Iteration_query-len>406</Iteration_query-len>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
26 <Iteration_hits>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
27 </Iteration_hits>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
28 <Iteration_stat>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
29 <Statistics>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
30 <Statistics_db-num>0</Statistics_db-num>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
31 <Statistics_db-len>0</Statistics_db-len>
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
32 <Statistics_hsp-len>27</Statistics_hsp-len>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
33 <Statistics_eff-space>1239330</Statistics_eff-space>
11
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
34 <Statistics_kappa>0.071</Statistics_kappa>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
35 <Statistics_lambda>0.299</Statistics_lambda>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
36 <Statistics_entropy>0.27</Statistics_entropy>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
37 </Statistics>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
38 </Iteration_stat>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
39 <Iteration_message>No hits found</Iteration_message>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
40 </Iteration>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
41 <Iteration>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
42 <Iteration_iter-num>2</Iteration_iter-num>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
43 <Iteration_query-ID>Query_2</Iteration_query-ID>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
44 <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
45 <Iteration_query-len>1161</Iteration_query-len>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
46 <Iteration_hits>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
47 </Iteration_hits>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
48 <Iteration_stat>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
49 <Statistics>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
50 <Statistics_db-num>0</Statistics_db-num>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
51 <Statistics_db-len>0</Statistics_db-len>
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
52 <Statistics_hsp-len>31</Statistics_hsp-len>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
53 <Statistics_eff-space>3667980</Statistics_eff-space>
11
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
54 <Statistics_kappa>0.071</Statistics_kappa>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
55 <Statistics_lambda>0.299</Statistics_lambda>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
56 <Statistics_entropy>0.27</Statistics_entropy>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
57 </Statistics>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
58 </Iteration_stat>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
59 <Iteration_message>No hits found</Iteration_message>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
60 </Iteration>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
61 <Iteration>
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
62 <Iteration_iter-num>3</Iteration_iter-num>
11
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
63 <Iteration_query-ID>Query_3</Iteration_query-ID>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
64 <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
65 <Iteration_query-len>1382</Iteration_query-len>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
66 <Iteration_hits>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
67 </Iteration_hits>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
68 <Iteration_stat>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
69 <Statistics>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
70 <Statistics_db-num>0</Statistics_db-num>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
71 <Statistics_db-len>0</Statistics_db-len>
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
72 <Statistics_hsp-len>32</Statistics_hsp-len>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
73 <Statistics_eff-space>4374000</Statistics_eff-space>
11
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
74 <Statistics_kappa>0.071</Statistics_kappa>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
75 <Statistics_lambda>0.299</Statistics_lambda>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
76 <Statistics_entropy>0.27</Statistics_entropy>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
77 </Statistics>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
78 </Iteration_stat>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
79 <Iteration_message>No hits found</Iteration_message>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
80 </Iteration>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
81 <Iteration>
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
82 <Iteration_iter-num>4</Iteration_iter-num>
11
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
83 <Iteration_query-ID>Query_4</Iteration_query-ID>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
84 <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
85 <Iteration_query-len>348</Iteration_query-len>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
86 <Iteration_hits>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
87 <Hit>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
88 <Hit_num>1</Hit_num>
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
89 <Hit_id>gi|57163782|ref|NM_001009242.1|</Hit_id>
11
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
90 <Hit_def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Hit_def>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
91 <Hit_accession>Subject_1</Hit_accession>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
92 <Hit_len>1047</Hit_len>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
93 <Hit_hsps>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
94 <Hsp>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
95 <Hsp_num>1</Hsp_num>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
96 <Hsp_bit-score>732.393</Hsp_bit-score>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
97 <Hsp_score>1689</Hsp_score>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
98 <Hsp_evalue>0</Hsp_evalue>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
99 <Hsp_query-from>1</Hsp_query-from>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
100 <Hsp_query-to>348</Hsp_query-to>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
101 <Hsp_hit-from>1</Hsp_hit-from>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
102 <Hsp_hit-to>1044</Hsp_hit-to>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
103 <Hsp_query-frame>0</Hsp_query-frame>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
104 <Hsp_hit-frame>1</Hsp_hit-frame>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
105 <Hsp_identity>336</Hsp_identity>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
106 <Hsp_positive>343</Hsp_positive>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
107 <Hsp_gaps>0</Hsp_gaps>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
108 <Hsp_align-len>348</Hsp_align-len>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
109 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
110 <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_hseq>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
111 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
112 </Hsp>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
113 </Hit_hsps>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
114 </Hit>
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
115 <Hit>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
116 <Hit_num>2</Hit_num>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
117 <Hit_id>gi|18148870|dbj|AB062417.1|</Hit_id>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
118 <Hit_def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Hit_def>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
119 <Hit_accession>Subject_5</Hit_accession>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
120 <Hit_len>1047</Hit_len>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
121 <Hit_hsps>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
122 <Hsp>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
123 <Hsp_num>1</Hsp_num>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
124 <Hsp_bit-score>711.256</Hsp_bit-score>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
125 <Hsp_score>1640</Hsp_score>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
126 <Hsp_evalue>0</Hsp_evalue>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
127 <Hsp_query-from>1</Hsp_query-from>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
128 <Hsp_query-to>348</Hsp_query-to>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
129 <Hsp_hit-from>1</Hsp_hit-from>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
130 <Hsp_hit-to>1044</Hsp_hit-to>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
131 <Hsp_query-frame>0</Hsp_query-frame>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
132 <Hsp_hit-frame>1</Hsp_hit-frame>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
133 <Hsp_identity>325</Hsp_identity>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
134 <Hsp_positive>337</Hsp_positive>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
135 <Hsp_gaps>0</Hsp_gaps>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
136 <Hsp_align-len>348</Hsp_align-len>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
137 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
138 <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_hseq>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
139 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
140 </Hsp>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
141 </Hit_hsps>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
142 </Hit>
11
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
143 <Hit>
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
144 <Hit_num>3</Hit_num>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
145 <Hit_id>gi|283855822|gb|GQ290312.1|</Hit_id>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
146 <Hit_def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Hit_def>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
147 <Hit_accession>Subject_4</Hit_accession>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
148 <Hit_len>983</Hit_len>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
149 <Hit_hsps>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
150 <Hsp>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
151 <Hsp_num>1</Hsp_num>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
152 <Hsp_bit-score>658.198</Hsp_bit-score>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
153 <Hsp_score>1517</Hsp_score>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
154 <Hsp_evalue>0</Hsp_evalue>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
155 <Hsp_query-from>11</Hsp_query-from>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
156 <Hsp_query-to>336</Hsp_query-to>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
157 <Hsp_hit-from>1</Hsp_hit-from>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
158 <Hsp_hit-to>978</Hsp_hit-to>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
159 <Hsp_query-frame>0</Hsp_query-frame>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
160 <Hsp_hit-frame>1</Hsp_hit-frame>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
161 <Hsp_identity>310</Hsp_identity>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
162 <Hsp_positive>322</Hsp_positive>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
163 <Hsp_gaps>0</Hsp_gaps>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
164 <Hsp_align-len>326</Hsp_align-len>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
165 <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT</Hsp_qseq>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
166 <Hsp_hseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT</Hsp_hseq>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
167 <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T</Hsp_midline>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
168 </Hsp>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
169 </Hit_hsps>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
170 </Hit>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
171 <Hit>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
172 <Hit_num>4</Hit_num>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
173 <Hit_id>gi|2734705|gb|U59921.1|BBU59921</Hit_id>
11
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
174 <Hit_def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Hit_def>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
175 <Hit_accession>Subject_2</Hit_accession>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
176 <Hit_len>1574</Hit_len>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
177 <Hit_hsps>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
178 <Hsp>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
179 <Hsp_num>1</Hsp_num>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
180 <Hsp_bit-score>646.12</Hsp_bit-score>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
181 <Hsp_score>1489</Hsp_score>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
182 <Hsp_evalue>0</Hsp_evalue>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
183 <Hsp_query-from>1</Hsp_query-from>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
184 <Hsp_query-to>341</Hsp_query-to>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
185 <Hsp_hit-from>42</Hsp_hit-from>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
186 <Hsp_hit-to>1067</Hsp_hit-to>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
187 <Hsp_query-frame>0</Hsp_query-frame>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
188 <Hsp_hit-frame>3</Hsp_hit-frame>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
189 <Hsp_identity>290</Hsp_identity>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
190 <Hsp_positive>320</Hsp_positive>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
191 <Hsp_gaps>1</Hsp_gaps>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
192 <Hsp_align-len>342</Hsp_align-len>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
193 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE</Hsp_qseq>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
194 <Hsp_hseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE</Hsp_hseq>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
195 <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S+ GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF+ QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE</Hsp_midline>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
196 </Hsp>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
197 </Hit_hsps>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
198 </Hit>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
199 <Hit>
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
200 <Hit_num>5</Hit_num>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
201 <Hit_id>gi|12583664|dbj|AB043817.1|</Hit_id>
11
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
202 <Hit_def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Hit_def>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
203 <Hit_accession>Subject_6</Hit_accession>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
204 <Hit_len>1344</Hit_len>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
205 <Hit_hsps>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
206 <Hsp>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
207 <Hsp_num>1</Hsp_num>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
208 <Hsp_bit-score>626.708</Hsp_bit-score>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
209 <Hsp_score>1444</Hsp_score>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
210 <Hsp_evalue>0</Hsp_evalue>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
211 <Hsp_query-from>1</Hsp_query-from>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
212 <Hsp_query-to>341</Hsp_query-to>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
213 <Hsp_hit-from>23</Hsp_hit-from>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
214 <Hsp_hit-to>1048</Hsp_hit-to>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
215 <Hsp_query-frame>0</Hsp_query-frame>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
216 <Hsp_hit-frame>2</Hsp_hit-frame>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
217 <Hsp_identity>281</Hsp_identity>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
218 <Hsp_positive>311</Hsp_positive>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
219 <Hsp_gaps>1</Hsp_gaps>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
220 <Hsp_align-len>342</Hsp_align-len>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
221 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE</Hsp_qseq>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
222 <Hsp_hseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE</Hsp_hseq>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
223 <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR CM+TT+CCGKNP +D ASAT SKTE</Hsp_midline>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
224 </Hsp>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
225 </Hit_hsps>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
226 </Hit>
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
227 <Hit>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
228 <Hit_num>6</Hit_num>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
229 <Hit_id>gi|283855845|gb|GQ290303.1|</Hit_id>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
230 <Hit_def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Hit_def>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
231 <Hit_accession>Subject_3</Hit_accession>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
232 <Hit_len>4301</Hit_len>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
233 <Hit_hsps>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
234 <Hsp>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
235 <Hsp_num>1</Hsp_num>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
236 <Hsp_bit-score>151.343</Hsp_bit-score>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
237 <Hsp_score>342</Hsp_score>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
238 <Hsp_evalue>1.34146e-71</Hsp_evalue>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
239 <Hsp_query-from>239</Hsp_query-from>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
240 <Hsp_query-to>312</Hsp_query-to>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
241 <Hsp_hit-from>3147</Hsp_hit-from>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
242 <Hsp_hit-to>3368</Hsp_hit-to>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
243 <Hsp_query-frame>0</Hsp_query-frame>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
244 <Hsp_hit-frame>3</Hsp_hit-frame>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
245 <Hsp_identity>69</Hsp_identity>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
246 <Hsp_positive>73</Hsp_positive>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
247 <Hsp_gaps>0</Hsp_gaps>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
248 <Hsp_align-len>74</Hsp_align-len>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
249 <Hsp_qseq>ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_qseq>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
250 <Hsp_hseq>ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_hseq>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
251 <Hsp_midline>ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
252 </Hsp>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
253 <Hsp>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
254 <Hsp_num>2</Hsp_num>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
255 <Hsp_bit-score>126.324</Hsp_bit-score>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
256 <Hsp_score>284</Hsp_score>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
257 <Hsp_evalue>1.34146e-71</Hsp_evalue>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
258 <Hsp_query-from>177</Hsp_query-from>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
259 <Hsp_query-to>235</Hsp_query-to>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
260 <Hsp_hit-from>2855</Hsp_hit-from>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
261 <Hsp_hit-to>3031</Hsp_hit-to>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
262 <Hsp_query-frame>0</Hsp_query-frame>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
263 <Hsp_hit-frame>2</Hsp_hit-frame>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
264 <Hsp_identity>54</Hsp_identity>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
265 <Hsp_positive>57</Hsp_positive>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
266 <Hsp_gaps>0</Hsp_gaps>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
267 <Hsp_align-len>59</Hsp_align-len>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
268 <Hsp_qseq>RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA</Hsp_qseq>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
269 <Hsp_hseq>RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS</Hsp_hseq>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
270 <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +</Hsp_midline>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
271 </Hsp>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
272 <Hsp>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
273 <Hsp_num>3</Hsp_num>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
274 <Hsp_bit-score>229.42</Hsp_bit-score>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
275 <Hsp_score>523</Hsp_score>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
276 <Hsp_evalue>3.3088e-67</Hsp_evalue>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
277 <Hsp_query-from>11</Hsp_query-from>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
278 <Hsp_query-to>121</Hsp_query-to>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
279 <Hsp_hit-from>1</Hsp_hit-from>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
280 <Hsp_hit-to>333</Hsp_hit-to>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
281 <Hsp_query-frame>0</Hsp_query-frame>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
282 <Hsp_hit-frame>1</Hsp_hit-frame>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
283 <Hsp_identity>107</Hsp_identity>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
284 <Hsp_positive>109</Hsp_positive>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
285 <Hsp_gaps>0</Hsp_gaps>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
286 <Hsp_align-len>111</Hsp_align-len>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
287 <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_qseq>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
288 <Hsp_hseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
289 <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
290 </Hsp>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
291 <Hsp>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
292 <Hsp_num>4</Hsp_num>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
293 <Hsp_bit-score>122.873</Hsp_bit-score>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
294 <Hsp_score>276</Hsp_score>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
295 <Hsp_evalue>2.31174e-32</Hsp_evalue>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
296 <Hsp_query-from>119</Hsp_query-from>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
297 <Hsp_query-to>177</Hsp_query-to>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
298 <Hsp_hit-from>1404</Hsp_hit-from>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
299 <Hsp_hit-to>1580</Hsp_hit-to>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
300 <Hsp_query-frame>0</Hsp_query-frame>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
301 <Hsp_hit-frame>3</Hsp_hit-frame>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
302 <Hsp_identity>55</Hsp_identity>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
303 <Hsp_positive>56</Hsp_positive>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
304 <Hsp_gaps>0</Hsp_gaps>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
305 <Hsp_align-len>59</Hsp_align-len>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
306 <Hsp_qseq>LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR</Hsp_qseq>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
307 <Hsp_hseq>LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR</Hsp_hseq>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
308 <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
309 </Hsp>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
310 <Hsp>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
311 <Hsp_num>5</Hsp_num>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
312 <Hsp_bit-score>57.7368</Hsp_bit-score>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
313 <Hsp_score>125</Hsp_score>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
314 <Hsp_evalue>3.61181e-12</Hsp_evalue>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
315 <Hsp_query-from>312</Hsp_query-from>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
316 <Hsp_query-to>337</Hsp_query-to>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
317 <Hsp_hit-from>4222</Hsp_hit-from>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
318 <Hsp_hit-to>4299</Hsp_hit-to>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
319 <Hsp_query-frame>0</Hsp_query-frame>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
320 <Hsp_hit-frame>1</Hsp_hit-frame>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
321 <Hsp_identity>23</Hsp_identity>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
322 <Hsp_positive>24</Hsp_positive>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
323 <Hsp_gaps>0</Hsp_gaps>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
324 <Hsp_align-len>26</Hsp_align-len>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
325 <Hsp_qseq>QFRNCMLTTICCGKNPLGDDEASATV</Hsp_qseq>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
326 <Hsp_hseq>QFRNCMLTTLCCGKNPLGDDEASTTA</Hsp_hseq>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
327 <Hsp_midline>QFRNCMLTT+CCGKNPLGDDEAS T </Hsp_midline>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
328 </Hsp>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
329 </Hit_hsps>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
330 </Hit>
11
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
331 </Iteration_hits>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
332 <Iteration_stat>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
333 <Statistics>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
334 <Statistics_db-num>0</Statistics_db-num>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
335 <Statistics_db-len>0</Statistics_db-len>
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
336 <Statistics_hsp-len>27</Statistics_hsp-len>
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
337 <Statistics_eff-space>1049670</Statistics_eff-space>
11
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
338 <Statistics_kappa>0.071</Statistics_kappa>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
339 <Statistics_lambda>0.299</Statistics_lambda>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
340 <Statistics_entropy>0.27</Statistics_entropy>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
341 </Statistics>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
342 </Iteration_stat>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
343 </Iteration>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
344 </BlastOutput_iterations>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
345 </BlastOutput>
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
diff changeset
346