Mercurial > repos > devteam > samtools_phase
annotate test-data/samtools_phase_out_2_log.txt @ 4:1e5880498f52 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_phase commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
author | iuc |
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date | Tue, 28 Sep 2021 16:15:54 +0000 |
parents | 8bfe0d1616d2 |
children |
rev | line source |
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0 | 1 CC |
2 CC Descriptions: | |
3 CC | |
4 CC CC comments | |
5 CC PS start of a phase set | |
6 CC FL filtered region | |
7 CC M[012] markers; 0 for singletons, 1 for phased and 2 for filtered | |
8 CC EV supporting reads; SAM format | |
9 CC // end of a phase set | |
10 CC | |
11 CC Formats of PS, FL and M[012] lines (1-based coordinates): | |
12 CC | |
13 CC PS chr phaseSetStart phaseSetEnd | |
14 CC FL chr filterStart filterEnd | |
15 CC M? chr PS pos allele0 allele1 hetIndex #supports0 #errors0 #supp1 #err1 | |
16 CC | |
17 CC | |
18 PS chrI 1412 1542 | |
19 M1 chrI 1412 1412 T C 1 7 0 9 0 | |
20 M1 chrI 1412 1414 G A 2 7 0 9 0 | |
21 M1 chrI 1412 1421 G A 3 7 0 9 0 | |
22 M1 chrI 1412 1471 T C 4 5 0 6 0 | |
23 M1 chrI 1412 1542 C T 5 3 0 2 0 | |
24 EV 0 chrI 1 40 3M * 0 0 TGG * YP:i:0 YF:i:0 YI:i:3 YO:i:0 YS:i:1366 | |
1
8bfe0d1616d2
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_phase commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents:
0
diff
changeset
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25 EV 0 chrI 1 40 3M * 0 0 CAA * YP:i:1 YF:i:0 YI:i:3 YO:i:0 YS:i:1343 |
0 | 26 EV 0 chrI 1 40 4M * 0 0 TGGT * YP:i:0 YF:i:0 YI:i:4 YO:i:0 YS:i:1409 |
27 EV 0 chrI 1 40 3M * 0 0 CAA * YP:i:1 YF:i:0 YI:i:3 YO:i:0 YS:i:1353 | |
1
8bfe0d1616d2
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_phase commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents:
0
diff
changeset
|
28 EV 0 chrI 1 40 3M * 0 0 TGG * YP:i:0 YF:i:0 YI:i:3 YO:i:0 YS:i:1358 |
8bfe0d1616d2
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_phase commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents:
0
diff
changeset
|
29 EV 0 chrI 1 40 4M * 0 0 CAAC * YP:i:1 YF:i:0 YI:i:4 YO:i:0 YS:i:1374 |
0 | 30 EV 0 chrI 1 40 3M * 0 0 CAA * YP:i:1 YF:i:0 YI:i:3 YO:i:0 YS:i:1350 |
1
8bfe0d1616d2
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_phase commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents:
0
diff
changeset
|
31 EV 0 chrI 1 40 4M * 0 0 CAAC * YP:i:1 YF:i:0 YI:i:4 YO:i:0 YS:i:1379 |
0 | 32 EV 0 chrI 1 40 4M * 0 0 CAAC * YP:i:1 YF:i:0 YI:i:4 YO:i:0 YS:i:1389 |
33 EV 0 chrI 1 40 3M * 0 0 TGG * YP:i:0 YF:i:0 YI:i:3 YO:i:0 YS:i:1341 | |
1
8bfe0d1616d2
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_phase commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents:
0
diff
changeset
|
34 EV 0 chrI 1 40 3M * 0 0 TGG * YP:i:0 YF:i:0 YI:i:3 YO:i:0 YS:i:1340 |
8bfe0d1616d2
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_phase commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents:
0
diff
changeset
|
35 EV 0 chrI 1 40 3M * 0 0 CAA * YP:i:1 YF:i:0 YI:i:3 YO:i:0 YS:i:1359 |
0 | 36 EV 0 chrI 1 40 4M * 0 0 CAAC * YP:i:1 YF:i:0 YI:i:4 YO:i:0 YS:i:1392 |
1
8bfe0d1616d2
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_phase commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents:
0
diff
changeset
|
37 EV 0 chrI 1 40 4M * 0 0 TGGT * YP:i:0 YF:i:0 YI:i:4 YO:i:0 YS:i:1407 |
8bfe0d1616d2
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_phase commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents:
0
diff
changeset
|
38 EV 0 chrI 1 40 3M * 0 0 TGG * YP:i:0 YF:i:0 YI:i:3 YO:i:0 YS:i:1346 |
8bfe0d1616d2
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_phase commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents:
0
diff
changeset
|
39 EV 0 chrI 1 40 3M * 0 0 CAA * YP:i:1 YF:i:0 YI:i:3 YO:i:0 YS:i:1348 |
8bfe0d1616d2
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_phase commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents:
0
diff
changeset
|
40 EV 0 chrI 4 40 2M * 0 0 TC * YP:i:0 YF:i:0 YI:i:2 YO:i:0 YS:i:1444 |
0 | 41 EV 0 chrI 4 40 2M * 0 0 CT * YP:i:1 YF:i:0 YI:i:2 YO:i:0 YS:i:1462 |
1
8bfe0d1616d2
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_phase commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents:
0
diff
changeset
|
42 EV 0 chrI 4 40 2M * 0 0 CT * YP:i:1 YF:i:0 YI:i:2 YO:i:0 YS:i:1457 |
0 | 43 EV 0 chrI 4 40 2M * 0 0 TC * YP:i:0 YF:i:0 YI:i:2 YO:i:0 YS:i:1468 |
44 EV 0 chrI 4 40 2M * 0 0 TC * YP:i:0 YF:i:0 YI:i:2 YO:i:0 YS:i:1461 | |
45 // | |
46 PS chrI 3611 3731 | |
47 M1 chrI 3611 3611 T A 6 5 0 4 0 | |
48 M1 chrI 3611 3659 C T 7 9 0 6 0 | |
49 M1 chrI 3611 3731 T A 8 4 0 1 1 | |
1
8bfe0d1616d2
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_phase commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents:
0
diff
changeset
|
50 EV 0 chrI 6 40 2M * 0 0 TC * YP:i:0 YF:i:0 YI:i:2 YO:i:0 YS:i:3569 |
0 | 51 EV 0 chrI 6 40 2M * 0 0 TC * YP:i:0 YF:i:0 YI:i:2 YO:i:0 YS:i:3569 |
1
8bfe0d1616d2
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_phase commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents:
0
diff
changeset
|
52 EV 0 chrI 6 40 2M * 0 0 AT * YP:i:1 YF:i:0 YI:i:2 YO:i:0 YS:i:3576 |
0 | 53 EV 0 chrI 6 40 2M * 0 0 TC * YP:i:0 YF:i:0 YI:i:2 YO:i:0 YS:i:3571 |
54 EV 0 chrI 6 40 2M * 0 0 AT * YP:i:1 YF:i:0 YI:i:2 YO:i:0 YS:i:3568 | |
1
8bfe0d1616d2
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_phase commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents:
0
diff
changeset
|
55 EV 0 chrI 6 40 2M * 0 0 AT * YP:i:1 YF:i:0 YI:i:2 YO:i:0 YS:i:3578 |
8bfe0d1616d2
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_phase commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents:
0
diff
changeset
|
56 EV 0 chrI 6 40 2M * 0 0 AT * YP:i:1 YF:i:0 YI:i:2 YO:i:0 YS:i:3590 |
8bfe0d1616d2
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_phase commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents:
0
diff
changeset
|
57 EV 0 chrI 6 40 2M * 0 0 TC * YP:i:0 YF:i:0 YI:i:2 YO:i:0 YS:i:3559 |
0 | 58 EV 0 chrI 6 40 2M * 0 0 TC * YP:i:0 YF:i:0 YI:i:2 YO:i:0 YS:i:3609 |
59 EV 0 chrI 7 40 2M * 0 0 TA * YP:i:1 YF:i:0 YI:i:2 YO:i:0 YS:i:3644 | |
1
8bfe0d1616d2
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_phase commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents:
0
diff
changeset
|
60 EV 0 chrI 7 40 2M * 0 0 CT * YP:i:0 YF:i:0 YI:i:2 YO:i:0 YS:i:3651 |
8bfe0d1616d2
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_phase commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents:
0
diff
changeset
|
61 EV 0 chrI 7 40 2M * 0 0 CT * YP:i:0 YF:i:0 YI:i:2 YO:i:0 YS:i:3637 |
8bfe0d1616d2
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_phase commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents:
0
diff
changeset
|
62 EV 0 chrI 7 40 2M * 0 0 CT * YP:i:0 YF:i:0 YI:i:2 YO:i:0 YS:i:3647 |
0 | 63 EV 0 chrI 7 40 2M * 0 0 TT * YP:i:1 YF:i:0 YI:i:1 YO:i:1 YS:i:3657 |
1
8bfe0d1616d2
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_phase commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents:
0
diff
changeset
|
64 EV 0 chrI 7 40 2M * 0 0 CT * YP:i:0 YF:i:0 YI:i:2 YO:i:0 YS:i:3644 |
0 | 65 // |