Mercurial > repos > devteam > vcfgenotypes
comparison vcfgenotypes.xml @ 0:1673e7848bf4 draft
Uploaded
| author | devteam |
|---|---|
| date | Thu, 19 Mar 2015 14:33:25 -0400 |
| parents | |
| children | 82635a34fbe6 |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:1673e7848bf4 |
|---|---|
| 1 <tool id="vcfgenotypes" name="VCFgenotypes:" version="0.0.3"> | |
| 2 <description>Convert numerical representation of genotypes to allelic</description> | |
| 3 <macros> | |
| 4 <import>macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements"></expand> | |
| 7 <expand macro="stdio" /> | |
| 8 <command>vcfgenotypes "${vcf_input}" > "${out_file1}"</command> | |
| 9 <inputs> | |
| 10 <param format="vcf" name="vcf_input" type="data" label="Select VCF dataset"/> | |
| 11 </inputs> | |
| 12 <outputs> | |
| 13 <data format="tabular" name="out_file1" /> | |
| 14 </outputs> | |
| 15 <tests> | |
| 16 <test> | |
| 17 <param name="vcf_input" value="vcflib.vcf"/> | |
| 18 <output name="out_file1" file="vcfgenotypes-test1.tab"/> | |
| 19 </test> | |
| 20 </tests> | |
| 21 <help> | |
| 22 | |
| 23 Converts numerical representation of genotypes (standard in GT field) to the alleles provided in the call's ALT/REF fields. | |
| 24 | |
| 25 ---- | |
| 26 | |
| 27 Vcfgenotypes @IS_PART_OF_VCFLIB@ | |
| 28 </help> | |
| 29 <expand macro="citations" /> | |
| 30 </tool> |