<tool id="vcfgenotypes" name="VCFgenotypes:" version="0.0.3">
  <description>Convert numerical representation of genotypes to allelic</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements"></expand>
  <expand macro="stdio" />
  <command>vcfgenotypes "${vcf_input}" > "${out_file1}"</command>
  <inputs>
    <param format="vcf" name="vcf_input" type="data" label="Select VCF dataset"/>
  </inputs>
  <outputs>
    <data format="tabular" name="out_file1" />
  </outputs>
  <tests>
    <test>
      <param name="vcf_input" value="vcflib.vcf"/>
      <output name="out_file1" file="vcfgenotypes-test1.tab"/>
    </test>
    </tests>
  <help>

Converts numerical representation of genotypes (standard in GT field) to the alleles provided in the call's ALT/REF fields.

----

Vcfgenotypes @IS_PART_OF_VCFLIB@
</help>
  <expand macro="citations" />
</tool>