Mercurial > repos > devteam > vcfgenotypes
diff vcfgenotypes.xml @ 1:82635a34fbe6 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 0b9b6512272b82637c2f1e831367e89aed77ae79
| author | devteam |
|---|---|
| date | Thu, 15 Sep 2016 16:06:44 -0400 |
| parents | 1673e7848bf4 |
| children | f5653ed90dfd |
line wrap: on
line diff
--- a/vcfgenotypes.xml Thu Mar 19 14:33:25 2015 -0400 +++ b/vcfgenotypes.xml Thu Sep 15 16:06:44 2016 -0400 @@ -1,30 +1,30 @@ -<tool id="vcfgenotypes" name="VCFgenotypes:" version="0.0.3"> - <description>Convert numerical representation of genotypes to allelic</description> - <macros> - <import>macros.xml</import> - </macros> - <expand macro="requirements"></expand> - <expand macro="stdio" /> - <command>vcfgenotypes "${vcf_input}" > "${out_file1}"</command> - <inputs> - <param format="vcf" name="vcf_input" type="data" label="Select VCF dataset"/> - </inputs> - <outputs> - <data format="tabular" name="out_file1" /> - </outputs> - <tests> - <test> - <param name="vcf_input" value="vcflib.vcf"/> - <output name="out_file1" file="vcfgenotypes-test1.tab"/> - </test> - </tests> - <help> - -Converts numerical representation of genotypes (standard in GT field) to the alleles provided in the call's ALT/REF fields. - ----- - -Vcfgenotypes @IS_PART_OF_VCFLIB@ -</help> - <expand macro="citations" /> -</tool> +<tool id="vcfgenotypes" name="VCFgenotypes:" version="@WRAPPER_VERSION@.0"> + <description>Convert numerical representation of genotypes to allelic</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"/> + <expand macro="stdio" /> + <command>vcfgenotypes "${vcf_input}" > "${out_file1}"</command> + <inputs> + <param format="vcf" name="vcf_input" type="data" label="Select VCF dataset"/> + </inputs> + <outputs> + <data format="tabular" name="out_file1" /> + </outputs> + <tests> + <test> + <param name="vcf_input" value="vcflib.vcf"/> + <output name="out_file1" file="vcfgenotypes-test1.tab"/> + </test> + </tests> + <help> + +Converts numerical representation of genotypes (standard in GT field) to the alleles provided in the call's ALT/REF fields. + +---- + +Vcfgenotypes @IS_PART_OF_VCFLIB@ +</help> + <expand macro="citations" /> +</tool>