diff r_wrapper.sh @ 4:ecb437f1d298 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/xy_plot commit d792f43f02cd0d6ab74411c21e0897937cb075aa
author devteam
date Sun, 17 Dec 2017 12:37:44 -0500
parents 319fa5a9fc1b
children
line wrap: on
line diff
--- a/r_wrapper.sh	Wed Dec 07 18:29:23 2016 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,23 +0,0 @@
-#!/bin/sh
-
-### Run R providing the R script in $1 as standard input and passing
-### the remaining arguments on the command line
-
-# Function that writes a message to stderr and exits
-function fail
-{
-    echo "$@" >&2
-    exit 1
-}
-
-# Ensure R executable is found
-which R > /dev/null || fail "'R' is required by this tool but was not found on path"
-
-# Extract first argument
-infile=$1; shift
-
-# Ensure the file exists
-test -f $infile || fail "R input file '$infile' does not exist"
-
-# Invoke R passing file named by first argument to stdin
-R --vanilla --slave $* < $infile