Mercurial > repos > dfornika > data_manager_build_kraken2_database

changeset 4:988c436ad798 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit f05f93ee024df8b38efa1c92db9785d52c726f85-dirty
author dfornika
date Fri, 01 Mar 2019 14:01:57 -0500
parents b03007bc0f05
children 1f6fe9dc5490
files data_manager/kraken2_build_custom.py data_manager/kraken2_build_custom.xml
diffstat 2 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/kraken2_build_custom.py	Thu Feb 28 18:55:04 2019 -0500
+++ b/data_manager/kraken2_build_custom.py	Fri Mar 01 14:01:57 2019 -0500
@@ -34,7 +34,7 @@
         '--db', database_name
     ]
     
-    run(args, target_directory)
+    # run(args, target_directory)
     
     args = [
         'kraken2-build',
--- a/data_manager/kraken2_build_custom.xml	Thu Feb 28 18:55:04 2019 -0500
+++ b/data_manager/kraken2_build_custom.xml	Fri Mar 01 14:01:57 2019 -0500
@@ -7,13 +7,13 @@
     <version_command>kraken2 -version | head -n 1 | awk '{print $NF}'</version_command>
     <command detect_errors="exit_code">
     <![CDATA[
-        python '$__tool_directory__/kraken2_build_standard.py'
+        python '$__tool_directory__/kraken2_build_custom.py'
           '${out_file}'
           --threads \${GALAXY_SLOTS:-1}
-          --fasta ${input_fasta}
           --kmer-len ${kmer_len}
           --minimizer-len ${minimizer_len}
           --minimizer-spaces ${minimizer_spaces}
+          --fasta ${input_fasta}
     ]]>
     </command>
     <inputs>