Mercurial > repos > dktanwar > test1
comparison 02_read_counts_tss/countsAroundTSS.xml @ 0:071d2d36c828 draft default tip
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author | dktanwar |
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date | Tue, 12 Sep 2017 14:14:32 -0400 |
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-1:000000000000 | 0:071d2d36c828 |
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1 <tool id="countsAroundTSS" name="None" version="0.1.0"> | |
2 <requirements> | |
3 </requirements> | |
4 <command detect_errors="exit_code"><![CDATA[ | |
5 Rscript countsAroundTSS.R --input $bam --input $genome --input $up_stream --input $downstream --input $TxDb --output $output | |
6 ]]></command> | |
7 <inputs> | |
8 <param type="data" name="bam" format="" /> | |
9 <param type="data" name="genome" type="character" /> | |
10 <param type="data" name="up_stream" type="integer" /> | |
11 <param type="data" name="downstream" type="integer" /> | |
12 <param type="data" name="TxDb" optional="true" format="sqlite" /> | |
13 </inputs> | |
14 <outputs> | |
15 <data name="ENCFF027UTM" format="txt" /> | |
16 </outputs> | |
17 <help><![CDATA[ | |
18 TODO: Fill in help. | |
19 ]]></help> | |
20 <citations> | |
21 <citation type="bibtex"> | |
22 @misc{renameTODO, | |
23 author = {LastTODO, FirstTODO}, | |
24 year = {TODO}, | |
25 title = {TODO}, | |
26 url = {https://www.cyberciti.biz/faq/list-the-contents-of-a-tar-or-targz-file/}, | |
27 }</citation> | |
28 </citations> | |
29 </tool> |