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view 02_read_counts_tss/countsAroundTSS.xml @ 0:071d2d36c828 draft default tip

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author dktanwar
date Tue, 12 Sep 2017 14:14:32 -0400
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<tool id="countsAroundTSS" name="None" version="0.1.0">
    <requirements>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        Rscript countsAroundTSS.R --input $bam --input $genome --input $up_stream --input $downstream --input $TxDb --output $output 
    ]]></command>
    <inputs>
        <param type="data" name="bam" format="" />
        <param type="data" name="genome" type="character" />
        <param type="data" name="up_stream" type="integer" />
        <param type="data" name="downstream" type="integer" />
        <param type="data" name="TxDb" optional="true" format="sqlite" />
    </inputs>
    <outputs>
        <data name="ENCFF027UTM" format="txt" />
    </outputs>
    <help><![CDATA[
        TODO: Fill in help.
    ]]></help>
    <citations>
        <citation type="bibtex">
@misc{renameTODO,
  author = {LastTODO, FirstTODO},
  year = {TODO},
  title = {TODO},
  url = {https://www.cyberciti.biz/faq/list-the-contents-of-a-tar-or-targz-file/},
}</citation>
    </citations>
</tool>