Mercurial > repos > dktanwar > test1
diff 02_read_counts_tss/countsAroundTSS.xml @ 0:071d2d36c828 draft default tip
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author | dktanwar |
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date | Tue, 12 Sep 2017 14:14:32 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/02_read_counts_tss/countsAroundTSS.xml Tue Sep 12 14:14:32 2017 -0400 @@ -0,0 +1,29 @@ +<tool id="countsAroundTSS" name="None" version="0.1.0"> + <requirements> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + Rscript countsAroundTSS.R --input $bam --input $genome --input $up_stream --input $downstream --input $TxDb --output $output + ]]></command> + <inputs> + <param type="data" name="bam" format="" /> + <param type="data" name="genome" type="character" /> + <param type="data" name="up_stream" type="integer" /> + <param type="data" name="downstream" type="integer" /> + <param type="data" name="TxDb" optional="true" format="sqlite" /> + </inputs> + <outputs> + <data name="ENCFF027UTM" format="txt" /> + </outputs> + <help><![CDATA[ + TODO: Fill in help. + ]]></help> + <citations> + <citation type="bibtex"> +@misc{renameTODO, + author = {LastTODO, FirstTODO}, + year = {TODO}, + title = {TODO}, + url = {https://www.cyberciti.biz/faq/list-the-contents-of-a-tar-or-targz-file/}, +}</citation> + </citations> +</tool>