|
1
|
1 <tool id="CSAW" name="CSAW" version="0.1.0">
|
|
|
2 <command detect_errors="exit_code"><![CDATA[
|
|
|
3 Rscript $__tool_directory__/csaw.R $inputs $output
|
|
|
4 ]]></command>
|
|
|
5 <inputs>
|
|
|
6 <param type="data" name="inputs" format="bam" multiple="True" />
|
|
|
7 </inputs>
|
|
|
8 <outputs>
|
|
|
9 <data name="output" format="txt" />
|
|
|
10 </outputs>
|
|
|
11 <tests>
|
|
|
12 <test>
|
|
|
13 <param name="inputs" value="ENCFF027UTM.bam,ENCFF027UTM_1.bam"/>
|
|
|
14 <output name="output" file="csaw_results"/>
|
|
|
15 </test>
|
|
|
16 </tests>
|
|
|
17 <help><![CDATA[
|
|
|
18 Write the tool help section here.
|
|
|
19 ]]></help>
|
|
|
20 <citations>
|
|
|
21 <citation type="bibtex">
|
|
|
22 @misc{github01_mismatch_removal,
|
|
|
23 author = {LastTODO, FirstTODO},
|
|
|
24 year = {TODO},
|
|
|
25 title = {01_mismatch_removal},
|
|
|
26 publisher = {GitHub},
|
|
|
27 journal = {GitHub repository},
|
|
|
28 url = {https://github.com/dktanwar/Galaxy_Tools/tree/master/01_mismatch_removal},
|
|
|
29 }</citation>
|
|
|
30 </citations>
|
|
|
31 </tool>
|
