Mercurial > repos > dktanwar > test_r

diff tmpnt.xml @ 1:6bcf6f6a347d draft default tip

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author dktanwar
date Tue, 24 Oct 2017 07:06:17 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tmpnt.xml	Tue Oct 24 07:06:17 2017 -0400
@@ -0,0 +1,29 @@
+<tool id="tmpnt" name="None" version="0.1.0">
+  <requirements>
+    <requirement type="package">R</requirement>
+    <requirement type="package">bioconductor-edgeR</requirement>
+    <requirement type="package">bioconductor-limma</requirement>
+    <requirement type="package">r-getopt</requirement>
+  </requirements>
+  <command detect_errors="exit_code"><![CDATA[
+        Rscript tmpnt.R --input $input --output $output 
+    ]]></command>
+  <inputs>
+    <param type="data" name="input" format="txt" />
+  </inputs>
+  <outputs>
+    <data name="output" format="txt" />
+  </outputs>
+  <tests>
+    <test>
+      <param name="input" value="input.txt"/>
+      <output name="output" file="output.txt"/>
+    </test>
+  </tests>
+  <help><![CDATA[
+        Fill in help.
+    ]]></help>
+  <citations>
+    <citation type="doi">10.1186/gb-2010-11-8-r86</citation>
+  </citations>
+</tool>