<tool id="tmpnt" name="None" version="0.1.0">
  <requirements>
    <requirement type="package">R</requirement>
    <requirement type="package">bioconductor-edgeR</requirement>
    <requirement type="package">bioconductor-limma</requirement>
    <requirement type="package">r-getopt</requirement>
  </requirements>
  <command detect_errors="exit_code"><![CDATA[
        Rscript tmpnt.R --input $input --output $output 
    ]]></command>
  <inputs>
    <param type="data" name="input" format="txt" />
  </inputs>
  <outputs>
    <data name="output" format="txt" />
  </outputs>
  <tests>
    <test>
      <param name="input" value="input.txt"/>
      <output name="output" file="output.txt"/>
    </test>
  </tests>
  <help><![CDATA[
        Fill in help.
    ]]></help>
  <citations>
    <citation type="doi">10.1186/gb-2010-11-8-r86</citation>
  </citations>
</tool>