Mercurial > repos > drosofff > msp_sr_readmap_and_size_histograms

annotate readmap.xml @ 16:1b8108a02da3 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 16119f70b162e16eee01de1e806e180ad76149f5
author drosofff
date Wed, 20 Dec 2017 18:49:52 -0500
parents ee1e4c892e9d
children a44d213048ce
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16
1b8108a02da3 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 16119f70b162e16eee01de1e806e180ad76149f5
drosofff
parents: 15
diff changeset
1 <tool id="Readmap" name="Generate readmap and histograms from alignment files" version="1.2.7">
8
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
diff changeset
2 <description>from sRbowtie aligment</description>
15
ee1e4c892e9d planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 170951554bb5674a7b2b7a13a03a3422a91af38d
drosofff
parents: 14
diff changeset
3 <requirements>
16
1b8108a02da3 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 16119f70b162e16eee01de1e806e180ad76149f5
drosofff
parents: 15
diff changeset
4 <requirement type="package" version="1.0.0">bowtie</requirement>
15
ee1e4c892e9d planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 170951554bb5674a7b2b7a13a03a3422a91af38d
drosofff
parents: 14
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5 <requirement type="package" version="1.11.2=py27_0">numpy</requirement>
10
be6fb196f074 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 8da4eb1a48d56a8186ba3ca33d3de73aff8da323
drosofff
parents: 9
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6 <requirement type="package" version="0.11.2.1=py27_0">pysam</requirement>
13
7234d438f495 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit eec44c6edc352050a20a9170932be1c3cfaba7bf
drosofff
parents: 12
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7 <requirement type="package" version="1.3.2=r3.3.2_0">r-optparse</requirement>
10
be6fb196f074 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 8da4eb1a48d56a8186ba3ca33d3de73aff8da323
drosofff
parents: 9
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8 <requirement type="package" version="0.6_28=r3.3.2_0">r-latticeextra</requirement>
be6fb196f074 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 8da4eb1a48d56a8186ba3ca33d3de73aff8da323
drosofff
parents: 9
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9 <requirement type="package" version="2.2.1=r3.3.2_0">r-gridextra</requirement>
15
ee1e4c892e9d planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 170951554bb5674a7b2b7a13a03a3422a91af38d
drosofff
parents: 14
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10 <requirement type="package" version="1.4.2=r3.3.2_0">r-reshape2</requirement>
ee1e4c892e9d planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 170951554bb5674a7b2b7a13a03a3422a91af38d
drosofff
parents: 14
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11 </requirements>
ee1e4c892e9d planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 170951554bb5674a7b2b7a13a03a3422a91af38d
drosofff
parents: 14
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12 <command><![CDATA[
8
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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13 python2 $__tool_directory__/readmap.py
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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14 #if $refGenomeSource.genomeSource == "history":
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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15 --reference_fasta
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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16 $refGenomeSource.ownFile ## index source
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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17 #else:
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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18 #silent reference= filter( lambda x: str( x[0] ) == str( $refGenomeSource.series[0].input.dbkey ), $__app__.tool_data_tables[ 'bowtie_indexes' ].get_fields() )[0][-1]
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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19 --reference_bowtie_index
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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20 $reference
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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21 #end if
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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22 --output_readmap
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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23 "$readmap_dataframe"
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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24 --output_size_distribution
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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25 "$size_distribution_dataframe"
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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26 --minquery $minquery
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
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27 --maxquery $maxquery
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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28 --input
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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29 #for $i in $refGenomeSource.series
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
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30 $i.input
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
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31 #end for
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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32 --ext
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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33 #for $i in $refGenomeSource.series
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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34 $i.input.ext
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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35 #end for
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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36 --label
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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37 #for $i in $refGenomeSource.series
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
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38 "$i.input.name"
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mvdbeek
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39 #end for
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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40 --normalization_factor
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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41 #for $i in $refGenomeSource.series
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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42 $i.norm
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
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43 #end for
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
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44 #if $gff:
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
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45 --gff
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
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46 $gff
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
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47 #end if
12
076008825416 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit a91db0ffc9ffa13820088fc2756f00c741a01165
drosofff
parents: 11
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48 ; Rscript '$__tool_directory__'/plot_size_readmap.r
8
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
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49 --readmap_tab "$readmap_dataframe"
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
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50 --size_distribution_tab "$size_distribution_dataframe"
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
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51 --readmap_pdf "$readmap_PDF"
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
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52 --size_distribution_pdf "$size_PDF"
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
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53 --combi_pdf "$combi_PDF"
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
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54 --title "$title"
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mvdbeek
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55 --xlabel "$xlabel"
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mvdbeek
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56 --ylabel "$ylabel"
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57 --yrange "$yrange"
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mvdbeek
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58 --rows_per_page "$rows_per_page"
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mvdbeek
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59 ]]>
0
ac7d8e55bb67 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit fe40dec87779c1fcfbd03330e653aa886f4a2cda
drosofff
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60 </command>
8
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
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61 <inputs>
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62 <conditional name="refGenomeSource">
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63 <param name="genomeSource" type="select" label="Will you select a reference genome from your history or use a built-in index?" help="Built-ins were indexed using default options">
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
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64 <option value="indexed">Use a built-in index</option>
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
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65 <option value="history">Use one from the history</option>
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
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66 </param>
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
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67 <when value="indexed">
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68 <repeat name="series" title="Add alignment files">
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
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69 <param name="input" type="data" label="Select multiple alignments to parse" format="tabular,sam,bam">
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
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70 <validator type="dataset_metadata_in_data_table" table_name="bowtie_indexes" metadata_name="dbkey" metadata_column="0" message="database not set for this bowtie output. Select the database(=genome used for matching) manually, or select a reference fasta from your history."/>
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
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71 </param>
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
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72 <param name="norm" type="float" value="1" label="Indicate a normalization factor to compare multiple aligments"/>
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
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73 </repeat>
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
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74 </when>
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
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75 <when value="history">
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
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76 <param name="ownFile" type="data" format="fasta" label="Select a fasta file, that served as the reference index for the alignments" />
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77 <repeat name="series" title="Add alignment files">
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78 <param name="input" type="data" label="Select multiple alignments to parse" format="tabular,sam,bam"/>
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79 <param name="norm" type="float" value="1" label="Indicate a normalization factor to compare multiple aligments"/>
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80 </repeat>
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81 </when>
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82 </conditional>
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83 <param name="gff" type="data" format="gff3" optional="true" label="Optional: select a GFF to investigate regions of interest" help="GFF must match genome build"/>
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84 <!-- <validator type="dataset_metadata_in_data_table" table_name="bowtie_indexes" metadata_name="dbkey" metadata_column="0" message="GFF database and alignment file databse do not match!"/> -->
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85 <param name="minquery" type="integer" size="3" value="18" label="Min size of query small RNAs" help="'18' = 18 nucleotides"/>
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86 <param name="maxquery" type="integer" size="3" value="28" label="Max size of query small RNAs" help="'28' = 28 nucleotides"/>
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87 <param name="title" type="text" size="15" value= "Readmaps and size distributions" label="Main Titles"/>
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88 <param name="xlabel" type="text" size="15" value="Coordinates/read size" label="x axis label"/>
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89 <param name="ylabel" type="text" size="15" value="Number of reads" label="y axis label"/>
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90 <param name="yrange" type="integer" size="3" value="0" label="y axis range for readmaps. 0 means auto-scaling."/>
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91 <param name="rows_per_page" type="text" size="9" value="8" label="How many items to display per page?">
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92 <validator type="in_range" min="6" max="20" message="Select between 6 and 20 rows, as the readability will suffer otherwise."/>
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93 </param>
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94 </inputs>
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95 <outputs>
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96 <data format="tabular" name="readmap_dataframe" label="Readmap dataframe"/>
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97 <data format="tabular" name="size_distribution_dataframe" label="Size distribution dataframe"/>
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98 <data format="pdf" name="readmap_PDF" label="Readmaps"/>
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99 <data format="pdf" name="size_PDF" label="Size distribution"/>
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100 <data format="pdf" name="combi_PDF" label="Size distribution and Readmaps"/>
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101 </outputs>
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102 <help>
0
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103
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104 **What it does**
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105
8
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106 Takes one or more alignment files (BAM, SAM or tabular bowtie output) as input and produces a "Readmap",
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107 where by default for each "chromosome" the position of the read is recorded on the x-axis, and the y-axis indicates
0
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108 the number of reads per position. Reads that map in sense are on the top, reads that map antisense are on the bottom.
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109
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110
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111 .. class:: warningmark
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112
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113 '''TIP''' The input data can be produced using the sRbowtie tool.
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114
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115 ----
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116
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117 '''Example'''
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118
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119 Query sequence::
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120 For a SAM file as the following:
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121
8
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122 5 16 2L_79 24393 255 17M * 0 0 CCTTCATCTTTTTTTTT IIIIIIIIIIIIIIIII XA:i:0 MD:Z:17 NM:i:0
0
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123
8
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124 11 0 2R_1 12675 255 21M * 0 0 AAAAAAAACGCGTCCTTGTGC IIIIIIIIIIIIIIIIIIIII XA:i:0 MD:Z:21 NM:i:0
0
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125
8
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126 2 16 2L_5 669 255 23M * 0 0 TGTTGCTGCATTTCTTTTTTTTT IIIIIIIIIIIIIIIIIIIIIII XA:i:0 MD:Z:23 NM:i:0
0
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127
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128 produce a plot like this:
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129
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130 ----
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131
8
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132 .. image:: static/images/readmap.png
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133 :height: 800
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134 :width: 500
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135 </help>
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136 <tests>
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137 <test>
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138 <param name="genomeSource" value="history" />
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139 <param name="ownFile" value ="transposons.fasta" ftype="fasta" />
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140 <param name="series_0|input" value="sample1.srbowtie_out" ftype="tabular"/>
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141 <param name="series_0|norm" value="1" />
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142 <param name="series_1|input" value="sample2.srbowtie_out" ftype="tabular"/>
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143 <param name="series_1|norm" value="1" />
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144 <param name="series_2|input" value="sample3.srbowtie_out" ftype="tabular"/>
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145 <param name="series_2|norm" value="1" />
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146 <param name="minquery" value="20" />
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147 <param name="maxquery" value="30" />
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148 <param name="title" value="Readmaps and size distributions" />
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149 <param name="xlabel" value="Coordinates/read size" />
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150 <param name="ylabel" value="Number of reads" />
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151 <param name="rows_per_page" value="8" />
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152 <output name="readmap_dataframe" ftype="tabular" file="Readmap_dataframe.tab" />
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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153 <output name="size_distribution_dataframe" ftype="tabular" file="Size_distribution_dataframe.tab" />
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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154 </test>
be0c6b6466cc planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 97b40d7a593cef6c3303f7baba781a84d242e454
mvdbeek
parents: 6
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155 </tests>
0
ac7d8e55bb67 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit fe40dec87779c1fcfbd03330e653aa886f4a2cda
drosofff
parents:
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156 </tool>