Mercurial > repos > earlhaminst > blast_parser
comparison blast_parser.xml @ 0:87eda806422d draft
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/blast_parser commit 75c6b4d9bd23cdd5f8e5626b1b01f2abba32c274-dirty
| author | earlhaminst |
|---|---|
| date | Mon, 12 Dec 2016 07:13:57 -0500 |
| parents | |
| children | fd11653657f9 |
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| -1:000000000000 | 0:87eda806422d |
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| 1 <tool id="blast_parser" name="blast_parser" version="0.1.1"> | |
| 2 <description> | |
| 3 Convert 12- or 24-column BLAST output into 3-column hcluster_sg input | |
| 4 </description> | |
| 5 | |
| 6 <command> | |
| 7 <![CDATA[ | |
| 8 perl $__tool_directory__/blast_parser.pl | |
| 9 $input | |
| 10 > $output | |
| 11 ]]> | |
| 12 </command> | |
| 13 | |
| 14 <inputs> | |
| 15 <param name="input" type="data" format="tabular" label="Tabular data" help="BLAST 12 column tabular format data"/> | |
| 16 </inputs> | |
| 17 | |
| 18 <outputs> | |
| 19 <data name="output" format="tabular" label="$tool.name on ${on_string}" /> | |
| 20 </outputs> | |
| 21 | |
| 22 <tests> | |
| 23 <test> | |
| 24 <param name="input" ftype="tabular" value="input.tabular" /> | |
| 25 <output name="output" file="output.tabular" /> | |
| 26 </test> | |
| 27 </tests> | |
| 28 <help> | |
| 29 <![CDATA[ | |
| 30 Simple tool to convert a 12- or 24-column BLAST output into a 3-column format (qseqid, sseqid, round(-1 * log10(evalue))) usable as input for the hcluster_sg tool. | |
| 31 ]]> | |
| 32 </help> | |
| 33 <citations> | |
| 34 </citations> | |
| 35 </tool> |