Mercurial > repos > earlhaminst > blast_parser

diff blast_parser.xml @ 0:87eda806422d draft

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/blast_parser commit 75c6b4d9bd23cdd5f8e5626b1b01f2abba32c274-dirty
author earlhaminst
date Mon, 12 Dec 2016 07:13:57 -0500
parents
children fd11653657f9
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/blast_parser.xml	Mon Dec 12 07:13:57 2016 -0500
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+<tool id="blast_parser" name="blast_parser" version="0.1.1">
+    <description>
+        Convert 12- or 24-column BLAST output into 3-column hcluster_sg input
+    </description>
+
+    <command>
+<![CDATA[
+perl $__tool_directory__/blast_parser.pl
+$input
+> $output
+]]>
+    </command>
+
+    <inputs>
+        <param name="input" type="data" format="tabular" label="Tabular data" help="BLAST 12 column tabular format data"/>
+    </inputs>
+
+    <outputs>
+        <data name="output" format="tabular" label="$tool.name on ${on_string}" />
+    </outputs>
+
+    <tests>
+        <test>
+            <param name="input" ftype="tabular" value="input.tabular" />
+            <output name="output" file="output.tabular" />
+        </test>
+    </tests>
+    <help>
+<![CDATA[
+Simple tool to convert a 12- or 24-column BLAST output into a 3-column format (qseqid, sseqid, round(-1 * log10(evalue))) usable as input for the hcluster_sg tool.
+]]>
+    </help>
+    <citations>
+    </citations>
+</tool>