Mercurial > repos > earlhaminst > geneseqtofamily

annotate GeneSeqToFamily.ga @ 7:e732a731f778 draft default tip

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
author earlhaminst
date Thu, 01 Sep 2022 11:32:32 +0000
parents 266800d51605
children
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b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
earlhaminst
parents:
diff changeset
1 {
7
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
2 "a_galaxy_workflow": "true",
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
3 "annotation": "",
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
4 "format-version": "0.1",
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
5 "name": "GeneSeqToFamily",
0
b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
earlhaminst
parents:
diff changeset
6 "steps": {
b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
earlhaminst
parents:
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7 "0": {
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e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
8 "annotation": "",
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
9 "content_id": null,
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
10 "errors": null,
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
11 "id": 0,
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
12 "input_connections": {},
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b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
earlhaminst
parents:
diff changeset
13 "inputs": [
b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
earlhaminst
parents:
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14 {
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e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
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15 "description": "",
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267a94f068d7 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 424b04f764977420ce4d92ebee5929fa18a30efb-dirty
earlhaminst
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16 "name": "CDS"
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b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
earlhaminst
parents:
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17 }
7
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
18 ],
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
19 "label": "CDS",
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
20 "name": "Input dataset",
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
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21 "outputs": [],
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b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
earlhaminst
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22 "position": {
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e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
23 "bottom": 4.8000030517578125,
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
24 "height": 61.80000305175781,
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
25 "left": 178.98333740234375,
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
26 "right": 378.98333740234375,
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
27 "top": -57,
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
28 "width": 200,
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
29 "x": 178.98333740234375,
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
30 "y": -57
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
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31 },
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
32 "tool_id": null,
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
33 "tool_state": "{\"optional\": false}",
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
34 "tool_version": null,
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
35 "type": "data_input",
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
36 "uuid": "d2777a78-6429-47f6-9567-cb15140ace8d",
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
37 "workflow_outputs": []
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
38 },
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b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
earlhaminst
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39 "1": {
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e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
40 "annotation": "",
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
41 "content_id": null,
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
42 "errors": null,
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
43 "id": 1,
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
44 "input_connections": {},
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b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
earlhaminst
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45 "inputs": [
b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
earlhaminst
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46 {
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e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
47 "description": "",
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266800d51605 "planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 3dbeddc06c9d15aadcc66a7eb7376c29da9233a3"
earlhaminst
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diff changeset
48 "name": "Species tree"
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b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
earlhaminst
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diff changeset
49 }
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e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
50 ],
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
51 "label": "Species tree",
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
52 "name": "Input dataset",
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
53 "outputs": [],
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b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
earlhaminst
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54 "position": {
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e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
55 "bottom": 419.88331604003906,
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
56 "height": 61.80000305175781,
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
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57 "left": 197.88333129882812,
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
58 "right": 397.8833312988281,
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earlhaminst
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diff changeset
59 "top": 358.08331298828125,
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
60 "width": 200,
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
61 "x": 197.88333129882812,
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
62 "y": 358.08331298828125
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
63 },
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
64 "tool_id": null,
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
65 "tool_state": "{\"optional\": false}",
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
66 "tool_version": null,
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
67 "type": "data_input",
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
68 "uuid": "1f2ca308-faad-44fa-ba48-fff5aeecbbd3",
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
69 "workflow_outputs": []
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
70 },
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earlhaminst
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71 "2": {
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earlhaminst
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diff changeset
72 "annotation": "",
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
73 "content_id": null,
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
74 "errors": null,
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
75 "id": 2,
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
76 "input_connections": {},
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earlhaminst
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diff changeset
77 "inputs": [
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earlhaminst
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78 {
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e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
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diff changeset
79 "description": "",
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266800d51605 "planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 3dbeddc06c9d15aadcc66a7eb7376c29da9233a3"
earlhaminst
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diff changeset
80 "name": "Gene feature information"
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earlhaminst
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161 "output_name": "out_file1"
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162 }
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163 },
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164 "inputs": [],
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165 "label": null,
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166 "name": "Filter FASTA",
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167 "outputs": [
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168 {
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169 "name": "output",
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170 "type": "fasta"
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171 },
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172 {
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174 "type": "fasta"
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176 ],
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186 },
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187 "post_job_actions": {
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188 "HideDatasetActiondiscarded": {
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189 "action_arguments": {},
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190 "action_type": "HideDatasetAction",
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191 "output_name": "discarded"
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192 },
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193 "HideDatasetActionoutput": {
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earlhaminst
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194 "action_arguments": {},
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195 "action_type": "HideDatasetAction",
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196 "output_name": "output"
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197 }
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198 },
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199 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/filter_by_fasta_ids/filter_by_fasta_ids/2.2",
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200 "tool_shed_repository": {
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201 "changeset_revision": "cd22452edec2",
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diff changeset
202 "name": "filter_by_fasta_ids",
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203 "owner": "galaxyp",
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204 "tool_shed": "toolshed.g2.bx.psu.edu"
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205 },
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206 "tool_state": "{\"dedup\": \"true\", \"header_criteria\": {\"header_criteria_select\": \"\", \"__current_case__\": 0}, \"input\": {\"__class__\": \"ConnectedValue\"}, \"output_discarded\": \"true\", \"sequence_criteria\": {\"sequence_criteria_select\": \"regexp\", \"__current_case__\": 2, \"regexp\": \"^[^*]+$\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
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207 "tool_version": "2.2",
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diff changeset
208 "type": "tool",
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209 "uuid": "8dd011eb-b442-42cf-b528-331739f3d252",
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210 "workflow_outputs": []
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211 },
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earlhaminst
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diff changeset
212 "5": {
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213 "annotation": "",
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214 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.3.0",
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diff changeset
215 "errors": null,
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216 "id": 5,
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217 "input_connections": {
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218 "input_file": {
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219 "id": 4,
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220 "output_name": "output"
266800d51605 "planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 3dbeddc06c9d15aadcc66a7eb7376c29da9233a3"
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221 }
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222 },
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223 "inputs": [
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224 {
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225 "description": "runtime parameter for tool NCBI BLAST+ makeblastdb",
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226 "name": "mask_data_file"
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227 }
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diff changeset
228 ],
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229 "label": null,
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230 "name": "NCBI BLAST+ makeblastdb",
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231 "outputs": [
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232 {
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233 "name": "outfile",
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234 "type": "data"
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235 }
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236 ],
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237 "position": {
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239 "height": 184.8000030517578,
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243 "width": 200,
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245 "y": -71.13333129882812
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earlhaminst
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246 },
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247 "post_job_actions": {
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248 "HideDatasetActionoutfile": {
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
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249 "action_arguments": {},
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diff changeset
250 "action_type": "HideDatasetAction",
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diff changeset
251 "output_name": "outfile"
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252 }
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earlhaminst
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253 },
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254 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.3.0",
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255 "tool_shed_repository": {
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256 "changeset_revision": "c877294f8025",
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earlhaminst
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diff changeset
257 "name": "ncbi_blast_plus",
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258 "owner": "devteam",
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259 "tool_shed": "toolshed.g2.bx.psu.edu"
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260 },
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earlhaminst
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261 "tool_state": "{\"dbtype\": \"prot\", \"hash_index\": \"true\", \"input_file\": {\"__class__\": \"ConnectedValue\"}, \"mask_data_file\": {\"__class__\": \"RuntimeValue\"}, \"parse_seqids\": \"false\", \"tax\": {\"taxselect\": \"\", \"__current_case__\": 0}, \"title\": \"\", \"__page__\": null, \"__rerun_remap_job_id__\": null}",
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earlhaminst
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diff changeset
262 "tool_version": "0.3.0",
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earlhaminst
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diff changeset
263 "type": "tool",
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265 "workflow_outputs": []
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earlhaminst
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266 },
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diff changeset
267 "6": {
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earlhaminst
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268 "annotation": "",
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diff changeset
269 "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/ucsc_fasplit/fasplit/332",
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270 "errors": null,
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271 "id": 6,
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272 "input_connections": {
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273 "input": {
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274 "id": 4,
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275 "output_name": "output"
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276 }
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277 },
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earlhaminst
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diff changeset
278 "inputs": [
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279 {
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diff changeset
280 "description": "runtime parameter for tool faSplit",
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281 "name": "O"
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282 }
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diff changeset
283 ],
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diff changeset
285 "name": "faSplit",
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287 {
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288 "name": "output_list",
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289 "type": "input"
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290 }
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292 "position": {
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293 "bottom": -160.89999389648438,
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294 "height": 113.60000610351562,
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298 "width": 200,
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300 "y": -274.5
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301 },
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diff changeset
302 "post_job_actions": {
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303 "HideDatasetActionoutput_list": {
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diff changeset
304 "action_arguments": {},
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diff changeset
305 "action_type": "HideDatasetAction",
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diff changeset
306 "output_name": "output_list"
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307 }
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earlhaminst
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diff changeset
308 },
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diff changeset
309 "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/ucsc_fasplit/fasplit/332",
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diff changeset
310 "tool_shed_repository": {
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earlhaminst
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diff changeset
311 "changeset_revision": "dc36d50254d8",
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earlhaminst
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diff changeset
312 "name": "ucsc_fasplit",
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earlhaminst
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diff changeset
313 "owner": "iuc",
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diff changeset
314 "tool_shed": "toolshed.g2.bx.psu.edu"
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earlhaminst
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diff changeset
315 },
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earlhaminst
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diff changeset
316 "tool_state": "{\"O\": {\"split_type\": \"sequence\", \"__current_case__\": 0, \"count\": {\"__class__\": \"RuntimeValue\"}}, \"input\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
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earlhaminst
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diff changeset
317 "tool_version": "332",
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earlhaminst
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diff changeset
318 "type": "tool",
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
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diff changeset
319 "uuid": "3f991f5d-a175-4df4-9870-0ff701437991",
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diff changeset
320 "workflow_outputs": []
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earlhaminst
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diff changeset
321 },
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diff changeset
322 "7": {
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323 "annotation": "",
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389 "name": "Concatenate datasets",
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518 },
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519 "tool_state": "{\"c_conditional\": {\"c\": \"\", \"__current_case__\": 1, \"s\": \"0.34\", \"m\": \"500\", \"b\": \"0.1\", \"O\": {\"O_selector\": \"\", \"__current_case__\": 1}, \"C\": {\"__class__\": \"RuntimeValue\"}, \"L\": \"2\"}, \"inputFile\": {\"__class__\": \"ConnectedValue\"}, \"w\": \"0\", \"__page__\": null, \"__rerun_remap_job_id__\": null}",
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520 "tool_version": "0.5.1.1",
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521 "type": "tool",
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diff changeset
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862 "genetreeFile": {
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864 "output_name": "output"
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1047 "name": "ete",
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1048 "owner": "earlhaminst",
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earlhaminst
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1052 "tool_version": "3.1.1",
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1058 "output_name": "homology",
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1069 "genetreeFile": {
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1070 "id": 19,
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1071 "output_name": "output"
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1075 {
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1076 "description": "runtime parameter for tool Gene Copy Number Finder",
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1081 "name": "speciesorder"
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1085 "name": "Gene Copy Number Finder",
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1089 "type": "tabular"
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1104 "tool_shed_repository": {
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1106 "name": "ete",
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1107 "owner": "earlhaminst",
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diff changeset
1111 "tool_version": "3.1.2",
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1112 "type": "tool",
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1114 "workflow_outputs": [
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1116 "label": "Gene Copy Number Finder on input dataset(s)",
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1117 "output_name": "genes",
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1118 "uuid": "96311b11-c446-49c4-8220-b0dacabd2b00"
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266800d51605 "planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 3dbeddc06c9d15aadcc66a7eb7376c29da9233a3"
earlhaminst
parents: 4
diff changeset
1119 }
266800d51605 "planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 3dbeddc06c9d15aadcc66a7eb7376c29da9233a3"
earlhaminst
parents: 4
diff changeset
1120 ]
0
b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
earlhaminst
parents:
diff changeset
1121 }
7
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
1122 },
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
1123 "tags": [],
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
1124 "uuid": "c3ff9db2-1e29-4b92-8633-b06eb0973eb4",
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
1125 "version": 1
e732a731f778 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
earlhaminst
parents: 6
diff changeset
1126 }