Mercurial > repos > ebi-gxa > salmon_kallisto_mtx_to_10x

annotate salmonKallistoMtxTo10x.xml @ 9:e42c217a450f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 12e9d45608ff77753b1bb492b8bd4130af5bd1ce"
author ebi-gxa
date Wed, 11 Mar 2020 11:28:41 -0400
parents 5675dc87bb8d
children 88f5a0a6a818
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
9
e42c217a450f "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 12e9d45608ff77753b1bb492b8bd4130af5bd1ce"
ebi-gxa
parents: 8
diff changeset
1 <tool id="_salmon_kallisto_mtx_to_10x" name="salmonKallistoMtxTo10x" version="0.0.1+galaxy5" profile="18.01">
0
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
2 <description>Transforms .mtx matrix and associated labels into a format compatible with tools expecting old-style 10X data</description>
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
3 <requirements>
8
5675dc87bb8d "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit bf9021c853da640771202920cde38f77cdeaf368"
ebi-gxa
parents: 7
diff changeset
4 <requirement type="package" version="1.4.1">scipy</requirement>
5675dc87bb8d "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit bf9021c853da640771202920cde38f77cdeaf368"
ebi-gxa
parents: 7
diff changeset
5 <requirement type="package" version="1.0.1">pandas</requirement>
9
e42c217a450f "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 12e9d45608ff77753b1bb492b8bd4130af5bd1ce"
ebi-gxa
parents: 8
diff changeset
6 <requirement type="package" version="5.37">file</requirement>
0
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
7 </requirements>
2
40f7a3d18cf4 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 3fbbd818012005da4513271beda50df98d3c1cde-dirty
ebi-gxa
parents: 1
diff changeset
8 <command detect_errors="exit_code"><![CDATA[
3
336ae8f0a0b2 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 3fbbd818012005da4513271beda50df98d3c1cde-dirty
ebi-gxa
parents: 2
diff changeset
9 file $mtx_file | grep 'gzip compressed' > /dev/null;
2
40f7a3d18cf4 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 3fbbd818012005da4513271beda50df98d3c1cde-dirty
ebi-gxa
parents: 1
diff changeset
10 if [ $? -eq 0 ]; then
40f7a3d18cf4 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 3fbbd818012005da4513271beda50df98d3c1cde-dirty
ebi-gxa
parents: 1
diff changeset
11 matrixfile=matrix.mtx.gz;
40f7a3d18cf4 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 3fbbd818012005da4513271beda50df98d3c1cde-dirty
ebi-gxa
parents: 1
diff changeset
12 else
40f7a3d18cf4 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 3fbbd818012005da4513271beda50df98d3c1cde-dirty
ebi-gxa
parents: 1
diff changeset
13 matrixfile=matrix.mtx;
40f7a3d18cf4 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 3fbbd818012005da4513271beda50df98d3c1cde-dirty
ebi-gxa
parents: 1
diff changeset
14 fi;
40f7a3d18cf4 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 3fbbd818012005da4513271beda50df98d3c1cde-dirty
ebi-gxa
parents: 1
diff changeset
15 ln -s ${mtx_file} \$matrixfile;
5
cd6007b47199 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 3fbbd818012005da4513271beda50df98d3c1cde-dirty
ebi-gxa
parents: 4
diff changeset
16 $__tool_directory__/salmonKallistoMtxTo10x.py --cell_prefix "${cell_prefix}" "\${matrixfile}" "${genes_file}" "${barcodes_file}" ./
0
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
17 ]]></command>
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
18
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
19 <inputs>
1
a2aaefceb418 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 3fbbd818012005da4513271beda50df98d3c1cde-dirty
ebi-gxa
parents: 0
diff changeset
20 <param name="mtx_file" type="data" format="mtx" label=".mtx-format matrix" />
0
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
21 <param name="genes_file" type="data" format="txt" label="Tab-delimited genes file" />
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
22 <param name="barcodes_file" type="data" format="txt" label="Tab-delimited barcodes file" />
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
23 <param name="cell_prefix" type="text" optional='true' value="" label="Prefix to prepend to cell names / barcodes" help="This is useful when multiple matrices from different libraries with overlapping barcodes will be merged"/>
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
24 </inputs>
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
25
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
26 <outputs>
6
17f7e1e51fad planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit c06e0424fd25356d1a8c172fb92b383fd9d28e90
ebi-gxa
parents: 5
diff changeset
27 <data name="genes_out" format="tabular" from_work_dir="genes.tsv" label="${tool.name} on ${on_string}: genes"/>
17f7e1e51fad planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit c06e0424fd25356d1a8c172fb92b383fd9d28e90
ebi-gxa
parents: 5
diff changeset
28 <data name="barcodes_out" format="tabular" from_work_dir="barcodes.tsv" label="${tool.name} on ${on_string}: barcodes"/>
1
a2aaefceb418 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 3fbbd818012005da4513271beda50df98d3c1cde-dirty
ebi-gxa
parents: 0
diff changeset
29 <data name="matrix_out" format="mtx" from_work_dir="matrix.mtx" label="${tool.name} on ${on_string}: matrix" />
0
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
30 </outputs>
8
5675dc87bb8d "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit bf9021c853da640771202920cde38f77cdeaf368"
ebi-gxa
parents: 7
diff changeset
31
0
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
32 <help><![CDATA[
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
33 .. class:: infomark
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
34
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
35 **What it does**
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
36
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
37 Kallisto and Alevin (and possibly other tools) output an MTX file and associated labels that are not consistent with the old-style 10X, meaning that routines designed to parse those files cannot be used. This tool transforms (in the mathematical sense) the matrix, and reformats the genes file (essentially duplicating the column) to match those earlier conventions.
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
38
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
39 **Inputs**
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
40
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
41 MTX and row and gene labels from the relevant tool. For Alevin this will be
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
42
8
5675dc87bb8d "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit bf9021c853da640771202920cde38f77cdeaf368"
ebi-gxa
parents: 7
diff changeset
43 * Matrix file: quants_mat.mtx.gz
0
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
44 * Genes file: quants_mat_cols.txt
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
45 * Barcodes file: quants_mat_rows.txt
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
46
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
47 For Kallisto it will be:
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
48
8
5675dc87bb8d "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit bf9021c853da640771202920cde38f77cdeaf368"
ebi-gxa
parents: 7
diff changeset
49 * Matrix file: [name].mtx.gz
0
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
50 * Genes file: [name].genes.txt
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
51 * Barcodes file: [name].barcodes.txt
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
52
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
53 -----
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
54
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
55 **Outputs**
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
56
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
57 * MTX, gene and cell labels in 10X style
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
58 ]]></help>
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
59 <citations>
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
60 <citation type="bibtex">
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
61 @misc{github-hinxton-single-cell,
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
62 author = {Jonathan Manning, EBI Gene Expression Team},
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
63 year = {2019},
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
64 title = {Hinxton Single Cell Anlysis Environment},
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
65 publisher = {GitHub},
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
66 journal = {GitHub repository},
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
67 url = {https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary},
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
68 }</citation>
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
69 </citations>
fe0fd27aba50 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 023431ca119829efbde33c94d54e051fac24a1d5
ebi-gxa
parents:
diff changeset
70 </tool>